Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30228
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47689| Best HMM Match : INCENP_ARK-bind (HMM E-Value=0.57)          28   6.8  
SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)                 28   6.8  
SB_43735| Best HMM Match : PHD (HMM E-Value=5.6e-06)                   28   9.0  
SB_34355| Best HMM Match : DUF827 (HMM E-Value=0.011)                  28   9.0  

>SB_47689| Best HMM Match : INCENP_ARK-bind (HMM E-Value=0.57)
          Length = 295

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 429 GPSETNRGLDPIDILTRIPPPTM 497
           G +ET RG DP  +L R+ PP +
Sbjct: 30  GDAETRRGKDPAVLLDRLDPPNV 52


>SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)
          Length = 1178

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 616  PDVRAYGKSSYHPELCR-SETVMHSDL 539
            PD+  Y K + HP+LC+  + V H D+
Sbjct: 1010 PDLYKYDKQARHPDLCKYDKQVRHPDM 1036


>SB_43735| Best HMM Match : PHD (HMM E-Value=5.6e-06)
          Length = 772

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +3

Query: 432 PSETNRGLDPIDILTRIPPPTMRHEIELSIVQNYNSKSECMTVSDRQSSGW*DDLP*ALT 611
           P E N+ L P  ++ +I      ++I    +Q  +   EC+TVSD+++       P  L 
Sbjct: 538 PHEVNQDL-PKTVIEQIQLKYSTYKI-CDAIQQIDEVFECLTVSDKEAEAIERASPDGLV 595

Query: 612 SGNTIGDGSTLLYCP 656
             +  G G   + CP
Sbjct: 596 MCDCCGIGLCEIKCP 610


>SB_34355| Best HMM Match : DUF827 (HMM E-Value=0.011)
          Length = 501

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 456 LIPDLFQMGHELLTLKNKKNIKRHTSS 376
           LIPDL    HE L L  +  + RH S+
Sbjct: 145 LIPDLMAKAHEALRLARRWRLMRHASA 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,882,854
Number of Sequences: 59808
Number of extensions: 480896
Number of successful extensions: 1060
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)