Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30228
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41273-7|AAP68952.1|  237|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U41273-6|AAA82457.2|  404|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL132876-7|CAD21659.1|  449|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC025726-6|AAK73923.2|  238|Caenorhabditis elegans Hypothetical ...    28   5.9  

>U41273-7|AAP68952.1|  237|Caenorhabditis elegans Hypothetical
           protein C26B9.1b protein.
          Length = 237

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 688 RFTGKL*IAFSGQY-NSVLPSPIVFPDVRAYGKSSYHPELCRSE 560
           R    L + +S +Y  SV+   ++FP    +G S+Y P+ C+++
Sbjct: 170 REAASLILKYSQEYVKSVVKKRLIFPSKPIHGVSNYAPKHCKTQ 213


>U41273-6|AAA82457.2|  404|Caenorhabditis elegans Hypothetical
           protein C26B9.1a protein.
          Length = 404

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 688 RFTGKL*IAFSGQY-NSVLPSPIVFPDVRAYGKSSYHPELCRSE 560
           R    L + +S +Y  SV+   ++FP    +G S+Y P+ C+++
Sbjct: 337 REAASLILKYSQEYVKSVVKKRLIFPSKPIHGVSNYAPKHCKTQ 380


>AL132876-7|CAD21659.1|  449|Caenorhabditis elegans Hypothetical
           protein Y105E8A.8 protein.
          Length = 449

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = -1

Query: 453 IPDLFQMG--HELLTLKNKKNIKRHTSSGHGFIAWYENIQRRSKNYTMQSNL*IYENKRT 280
           +PDLF  G    L+ + + K  +   S+  G +  Y N+      +     L +Y ++R 
Sbjct: 275 MPDLFAAGGSSSLVAIYSLK-WRNAVSTIEGSLKGYTNL------HFSPDGLKLYASERK 327

Query: 279 HHLICYEIKLNQLSKLATRDMS 214
             + C++ ++N L+++  RDM+
Sbjct: 328 GDIHCFDTRMNMLTQILKRDMT 349


>AC025726-6|AAK73923.2|  238|Caenorhabditis elegans Hypothetical
           protein Y71G12B.22 protein.
          Length = 238

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = -1

Query: 423 LLTLKNKKNIKRHTSSGHGFIAWYENIQRRSKNYTMQSNL*IYENKRTHHLICYEIKLNQ 244
           +L +KN   +   T   HG     E I   +++YT Q ++   +     H + +E+KL  
Sbjct: 22  VLGMKNHPEVIDLTQMSHGTSLILEKIMSGNRDYTTQISM--NQAAELCH-VAHELKLVN 78

Query: 243 LSKLATRDM 217
           L KL   DM
Sbjct: 79  LLKLVEMDM 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,984,179
Number of Sequences: 27780
Number of extensions: 359044
Number of successful extensions: 780
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)