Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30228
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g45160.1 68414.m05177 protein kinase family protein contains ...    29   4.2  
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila...    28   5.6  
At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS) id...    28   5.6  
At1g51610.1 68414.m05814 cation efflux family protein / metal to...    28   7.3  
At3g45430.1 68416.m04904 lectin protein kinase family protein co...    27   9.7  

>At1g45160.1 68414.m05177 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 1067

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 99  IINNLTHLTEHECDIIAAQASYHHRRHSEDE 7
           +INN   L+ HE D+     S+H +++ E+E
Sbjct: 819 LINNTIDLSGHESDVSPRTNSHHFQKNQEEE 849


>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar to
            SP|P35207 Antiviral protein SKI2 {Saccharomyces
            cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
            box helicase, PF00271: Helicase conserved C-terminal
            domain
          Length = 1347

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 411  LG*VAHGPSETNRGLDPIDILTRIPPP 491
            LG V  GPS TNR    + I + IPPP
Sbjct: 938  LGIVLKGPSNTNRQYVVLVIKSEIPPP 964


>At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS)
           identical to solanesyl diphosphate synthase [Arabidopsis
           thaliana] GI:19911233; contains Pfam profile PF00348:
           Polyprenyl synthetase
          Length = 406

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 1   GDFILAVASMMIARLRSDDVTLVLSQVSQIINNVLMVRKKNKTACDTAAD 150
           GDF+ A AS  +A L + +V  ++SQV +   +  + +  +   CDT  D
Sbjct: 199 GDFMFAQASWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDTKLD 248


>At1g51610.1 68414.m05814 cation efflux family protein / metal
           tolerance protein, putative (MTPc4) member of the cation
           diffusion facilitator (CDF) family, or cation efflux
           (CE) family, PMID:11500563
          Length = 457

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -1

Query: 663 RSLDSITVYCHHQSYFLMLGPMASHLTIQNFVGQKRSCIPTWSCNFVLLKVRFRVSWW 490
           R    I  Y  H+++F         + I +   Q+      W CNF++  ++F V WW
Sbjct: 82  RETPLIDTYSSHRNFFTR-AKQVKRIEINDQHSQRAVTTALW-CNFLVFSLKFGV-WW 136


>At3g45430.1 68416.m04904 lectin protein kinase family protein
           contains Pfam domains PF00138: Legume lectins alpha
           domain and PF00069: Protein kinase domain
          Length = 613

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = -1

Query: 684 SPENCK*RSLDSITVYCHHQSYFLMLGPMASHLTIQNFVGQKRSCIPTWSCNFVLLK 514
           S ++ K R+L  +  YC  +   L++     + ++   +   +S + +WS  FV+LK
Sbjct: 330 SMKSLKHRNLVPLLGYCRRKGELLLVSEYMPNGSLDQHLFDDQSPVLSWSQRFVILK 386


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,829,032
Number of Sequences: 28952
Number of extensions: 326970
Number of successful extensions: 686
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)