Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30227
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)                 87   2e-17
SB_2703| Best HMM Match : PMP22_Claudin (HMM E-Value=2.5)              30   1.9  
SB_27467| Best HMM Match : ANF_receptor (HMM E-Value=6.9e-19)          29   2.5  
SB_49176| Best HMM Match : Suf (HMM E-Value=0.6)                       29   4.3  
SB_46040| Best HMM Match : PTN_MK_N (HMM E-Value=5.4)                  29   4.3  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               28   5.7  
SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023)                   28   7.6  

>SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)
          Length = 513

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 44/77 (57%), Positives = 59/77 (76%)
 Frame = +3

Query: 363 ALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVVAPGEFAACQLEEVRQVGSYKKGTMM 542
           ALLKR+T+L PS  +QA V +LVTK+ +VLDN++V P + A   +EEVR VGS+KKGTM+
Sbjct: 378 ALLKRNTKLTPSQQEQALVQNLVTKVTSVLDNLIVDP-DTAEFGVEEVRAVGSHKKGTML 436

Query: 543 AGKNVADIVVIMKTLPT 593
            G  +AD+ VI+K LPT
Sbjct: 437 LGHPIADLTVILKRLPT 453


>SB_2703| Best HMM Match : PMP22_Claudin (HMM E-Value=2.5)
          Length = 281

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +2

Query: 416 CFEPRHETADSIGQYCCGSRRICSLPTRRSAASWVLQEGDNDGREECC 559
           CFE RH   D++ +  CG       P R S   W +   +  G E+ C
Sbjct: 49  CFEVRHNETDALIKENCGDWFEGGFPDRPSGRLWNVHLRNRAGLEKFC 96


>SB_27467| Best HMM Match : ANF_receptor (HMM E-Value=6.9e-19)
          Length = 922

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
 Frame = +3

Query: 393 PSPTDQAAVLSLVTKLQTVLD-NIVVAPGE--FAACQLEEVRQVGSYKKGTMMAGKNVAD 563
           PS   Q  + SLVTK++T  D N++V  G+   +   LEEVR+ G   K T +A +  ++
Sbjct: 345 PSTGYQTKIASLVTKIKTANDVNVIVLWGDPTTSIAFLEEVRKQGVTGK-TWLAPEGWSE 403

Query: 564 IVVIMK 581
              + K
Sbjct: 404 ATSLFK 409


>SB_49176| Best HMM Match : Suf (HMM E-Value=0.6)
          Length = 594

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
 Frame = +2

Query: 221 YPRPGRDGASTLQQTPSLDAS-SALRPFTSRTRFS*MQTGTRR--LRAHSGPSKEAHGAM 391
           +PR G D AS++   PS D S S+   F S  R    + G  R  L   SG         
Sbjct: 450 FPRGGDDDASSIGYAPSDDTSDSSAAYFGSFPRHHEAKFGYSRPKLIRLSGDFPGIRNLE 509

Query: 392 SVTYRSSSCFEPRHETA-DSIGQYCCGSRRICSLPTRRSAAS 514
            +  +  S          DS   +  GSR + SLP  RS  S
Sbjct: 510 KMRRKKQSMGSTSSGAGIDSTSSFRSGSRSLSSLPESRSLTS 551


>SB_46040| Best HMM Match : PTN_MK_N (HMM E-Value=5.4)
          Length = 248

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 356 HSGPSKEAHGAMSVTYRSSSCFEPRHETADSIGQ 457
           H  P K AHG + + +R  SC E R ++ +   Q
Sbjct: 63  HGKPVKSAHGDIGLHHREPSCSEIRGDSCEDDAQ 96


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 288 PFDLLL-AEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTV 449
           PF L++ AE    R KPAP        +   H  L P P     + S+V K Q V
Sbjct: 417 PFALVMEAEREHARAKPAPVQDRNEAKITTEHVRLTPVPGIVVKIESMVDKPQFV 471


>SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 393 PSPTDQAAVLSLVTKLQTVLDNIVVAPGEF 482
           PSP      L  VT ++ +LD +  +PGEF
Sbjct: 48  PSPQTTGPDLEAVTFVKDILDQLTESPGEF 77


>SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023)
          Length = 906

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 37  KCPINTIRTLYKLARKNNQRKISENTTSMSLTFQVQNKVKTLT*NKLFFLKWC 195
           +CPIN+ R  +   ++ NQ+    N    +L   ++ K ++LT    F LK C
Sbjct: 792 RCPINSQRIFWASLKRTNQQNEEYNQFLSNLKSYMEAKGESLT--NPFLLKSC 842


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,428,812
Number of Sequences: 59808
Number of extensions: 399054
Number of successful extensions: 919
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)