Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30227
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79759-2|CAB02137.1|  255|Caenorhabditis elegans Hypothetical pr...    31   0.94 
AF100670-1|AAN73858.1|  420|Caenorhabditis elegans Puf (pumilio/...    28   5.0  
Z93386-4|CAB07644.1|  370|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical...    28   6.6  

>Z79759-2|CAB02137.1|  255|Caenorhabditis elegans Hypothetical
           protein ZK858.2 protein.
          Length = 255

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
 Frame = +3

Query: 300 LLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVVAPGE 479
           LLA P     +P P    +  + L+  T +  SPTD   +  LVT    +   +++ P +
Sbjct: 17  LLATPPVAIRRPLPYPRDIISSPLEVATPVTVSPTDFMPIRELVTTPYHISTPVLITPVD 76

Query: 480 FAACQLEEVRQVGSYKKGTMMAGKNVADIV---VIMKTLPTKELSRDSPIRLTR 632
             +   E VR     +  T  A ++V + V   + M T    E+  ++P  L R
Sbjct: 77  ARSISREIVRVNRIRRVRTRQASRSVFNSVRRRLSMITANRTEIQMNTPQTLPR 130


>AF100670-1|AAN73858.1|  420|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 4 protein.
          Length = 420

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 570 PRYQQHSSRPSLSPSCR 520
           PRYQQ +S PS++P+ R
Sbjct: 82  PRYQQRASTPSMTPTAR 98


>Z93386-4|CAB07644.1|  370|Caenorhabditis elegans Hypothetical
           protein R11H6.5 protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/85 (23%), Positives = 35/85 (41%)
 Frame = +3

Query: 345 DSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVVAPGEFAACQLEEVRQVGSY 524
           D+V  + +L R   L PS   +  +     K+   L+             +  +  VGS+
Sbjct: 38  DAVFEKEILDRAANLTPSVEIRKRINEYAKKVIVALEK-EKREKTLVDIGIATISHVGSF 96

Query: 525 KKGTMMAGKNVADIVVIMKTLPTKE 599
              T     + +D+VV + TLP+ E
Sbjct: 97  VTDTTTHSSDKSDVVVQLSTLPSYE 121


>Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical
           protein D2085.3 protein.
          Length = 666

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 365 PSKEAHGAMSVTYRSS--SCFEPRHETADSIGQYCCGSRRICSLPTRRSAASWVLQ 526
           P KE H  +++    +    F P HE+       C G+  IC++P    A SW+++
Sbjct: 12  PKKEEHPLVAIVILDAFDQRFAPTHESYP-----CFGTIPICNVPAINFALSWLMR 62


>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
           protein Y111B2A.14 protein.
          Length = 1481

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 263 TPSLDASSALRPFTSRTRFS*MQTGTRRLRAHSGPSKE 376
           TP   +S+ALRP TS T      T T +    S  S E
Sbjct: 822 TPKASSSTALRPSTSSTPSQQQSTSTAKAMTSSSTSAE 859


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,161,702
Number of Sequences: 27780
Number of extensions: 293520
Number of successful extensions: 737
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)