Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30227
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52250.1 68418.m06485 transducin family protein / WD-40 repea...    31   0.88 
At4g33985.1 68417.m04822 expressed protein                             29   2.7  
At2g18010.1 68415.m02093 auxin-responsive family protein similar...    29   2.7  
At5g01400.1 68418.m00053 expressed protein contains low similari...    29   3.5  
At5g53440.1 68418.m06641 expressed protein                             27   8.2  
At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containi...    27   8.2  

>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to photomorphogenesis repressor PnCOP1
           (GI:11127996) [Ipomoea nil]
          Length = 385

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 398 TYRSSSCFEPRHETADSIGQYCCGSRRICSLPTRRSAASWVLQEGDNDG 544
           +YR SS  E R +   +   Y C   ++ SL  R   +  V+  GD DG
Sbjct: 97  SYRLSSLLESRDDHVTASESYICTPAKLSSLKWRPDFSGRVIGSGDYDG 145


>At4g33985.1 68417.m04822 expressed protein
          Length = 154

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 422 EPR-HETADSIGQYCCGSRRICSLPTRRSAASWVLQEGDN 538
           +PR  ET  ++G YC  +++  S  +R S+ S +  EG+N
Sbjct: 75  DPRLSETLPALGLYCAVNKQYSSRLSRTSSLSSIASEGEN 114


>At2g18010.1 68415.m02093 auxin-responsive family protein similar to
           auxin-induced protein TGSAUR22 (GI:10185820) [Tulipa
           gesnerian] ;similar to indole-3-acetic acid induced
           protein ARG7 (SP:P32295) [Phaseolus aureus]
          Length = 112

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -1

Query: 581 FHDDHDISNILPGHHCPLLVGPNLPHFF*LAGCKFSWSHNNIVQYCLQFRDE 426
           ++ + D+   +P  H P+ VGPN   +        SW H++  Q  L+  +E
Sbjct: 38  YNQEDDLPQDVPKGHFPVYVGPNRSRYI----VPISWLHHSEFQTLLRLAEE 85


>At5g01400.1 68418.m00053 expressed protein contains low similarity to
            symplekin SP:Q92797 from [Homo sapiens]
          Length = 1467

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +2

Query: 242  GASTLQQTPSLDASSALRPFTSRTRFS*MQTGTRRLR 352
            G S + QTP +  SSA  P TS TR S  Q  ++ LR
Sbjct: 1395 GQSDMSQTPQVSDSSAPEP-TSHTRTSDPQASSQTLR 1430


>At5g53440.1 68418.m06641 expressed protein
          Length = 1181

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 359 SGPSKEAHGAMSVTYRSSSCFEPRHETADSIGQYC 463
           + P+KE H +   T    +  +P  ET D+  +YC
Sbjct: 820 TSPAKELHASSPKTMEEVAADDPVSETIDNTERYC 854


>At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587, post-transcriptional control of
           chloroplast gene expression CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 918

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 200 HRSWWTRYPRPGRDGASTLQQTPSLDASSALRPFTSRT-RFS*MQT 334
           HR W  + PRPGR   S     PS  AS +    +  T  FS +QT
Sbjct: 15  HRPWLPQRPRPGR---SVTSAPPSSSASVSSAHLSQTTPNFSPLQT 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,379,191
Number of Sequences: 28952
Number of extensions: 276772
Number of successful extensions: 610
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)