Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30224
         (708 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6SKZ7 Cluster: NADH-ubiquinone oxidoreductase chain 4;...    36   0.74 
UniRef50_Q9AVZ9 Cluster: Putative uncharacterized protein; n=1; ...    34   3.9  
UniRef50_Q8IL77 Cluster: Putative uncharacterized protein; n=1; ...    33   9.1  

>UniRef50_Q6SKZ7 Cluster: NADH-ubiquinone oxidoreductase chain 4;
           n=1; Hutchinsoniella macracantha|Rep: NADH-ubiquinone
           oxidoreductase chain 4 - Hutchinsoniella macracantha
          Length = 444

 Score = 36.3 bits (80), Expect = 0.74
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = +1

Query: 82  SRVTGVMLN*IISIFLWCIFILLLKVPSYKINK*NTNSRMLNFLMVPLVCQLMLLF 249
           S +T V+ N +I + LW IF++ L    Y +NK   + +  NF+++ L+  L L F
Sbjct: 50  SLMTDVLSNTLILLTLWIIFLMFLSSMKYNLNK---HKKEFNFVLIILMFTLTLTF 102


>UniRef50_Q9AVZ9 Cluster: Putative uncharacterized protein; n=1;
           Guillardia theta|Rep: Putative uncharacterized protein -
           Guillardia theta (Cryptomonas phi)
          Length = 861

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -2

Query: 206 FSIREFVFYLFIL*LGTFNNRINIHHKNIDIIQFNMTPVTRDVYKLSPLKFLL 48
           F    FVF  F+L +  F + ++I   N+D I      +  D YKL P+ +LL
Sbjct: 129 FKFHPFVFKSFLL-IENFASIVDILKDNLDFIAEKKIKIFLDAYKLHPISYLL 180


>UniRef50_Q8IL77 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 1226

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 25/77 (32%), Positives = 35/77 (45%)
 Frame = -3

Query: 412 KFIS*RYLN*FLKSYPRTNEAQEWNVLFRTIEYFIIIIYNTNFEFTPRGGQTDNQIEALT 233
           K IS   LN  L SY   +   E+N + + I+    IIYN N     +     N  E L 
Sbjct: 633 KNISQEILN-ILLSYIMDDSQNEFNFVVQNIDLLKRIIYNANINMNDK-----NVNEKLL 686

Query: 232 DRLTEPSENLAFENLCF 182
           D ++E  + +   NLCF
Sbjct: 687 DDISEKRKYVYIVNLCF 703


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 670,647,830
Number of Sequences: 1657284
Number of extensions: 12689142
Number of successful extensions: 27798
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27787
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)