Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30224
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    27   2.6  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    26   4.6  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   4.6  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   4.6  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   8.0  

>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 81  VTRYWRHVELNNINIFVVYIYSIVESSQ 164
           V+R W+ +  NN+NI + +I+ + E+ +
Sbjct: 277 VSRLWKEILDNNLNIAIHHIFKLSEAKE 304


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = -2

Query: 332 ISYDRIFYYYYLQYKLRVHTSRRTDGQSNRSIN*QTNGTIRKFSIREFVFYLFIL*LGTF 153
           I+Y+   ++Y     +     RR +  +++S+      + ++ SI+  + YLF+  +G  
Sbjct: 671 INYNNASFFYTSVDSIASLIHRRWESNTDKSVEIPCFQSSQRRSIKNVIHYLFLSSIGVS 730

Query: 152 NNRI---NIHHKNID 117
             +I   ++  K ID
Sbjct: 731 REKIFDPSLSRKEID 745


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 247  IEALTDRLTEPSENLAFENLCFIYLF 170
            + A+ ++L  PS +  + + CF+YLF
Sbjct: 1982 LTAIANQLRYPSSHTYYASCCFLYLF 2007


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +1

Query: 127 LWCIFILLLKVPSYKINK*NTNSRMLNFLMVPLVCQLMLLFDC 255
           +W  F L+LK      ++       LNF   PL C +    DC
Sbjct: 328 VWFTFRLVLKTKPLYASESEFYETKLNFFTFPLECAINFHIDC 370


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 220 EPSENLAFENLCFIY-LFCNWELSTI 146
           E  ENL FE+ C IY L C +  + I
Sbjct: 95  ESFENLIFEHACLIYRLACTYHTTAI 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,582
Number of Sequences: 5004
Number of extensions: 55879
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)