Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30224
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0303 - 2171796-2172611,2173133-2174062,2174659-2175132,217...    31   0.90 
03_05_1090 + 30313176-30313292,30314162-30314236,30314938-303151...    29   3.6  

>07_01_0303 -
           2171796-2172611,2173133-2174062,2174659-2175132,
           2175569-2175609,2176298-2176337
          Length = 766

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 358 NEAQEWNVLFRTIEYFII--IIYNTNFEFTPRGGQTDNQIEALTDRLTEPSENLAFENLC 185
           +E QE NV   T+E  ++  ++   +F     G  TD Q       + EP E +AF ++ 
Sbjct: 36  DEVQEINVHLETVENALVKTVVNEDDFVDEESGSDTDEQATEDDLEIMEPKEGMAFASVN 95

Query: 184 FIYLF 170
             ++F
Sbjct: 96  DAFVF 100


>03_05_1090 +
           30313176-30313292,30314162-30314236,30314938-30315181,
           30315701-30315787,30315832-30315995,30316587-30316689,
           30317751-30317908,30318025-30318105,30318192-30318344
          Length = 393

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 337 VLFRTIEYFIIIIYNTNFEFTPRGGQTDNQIEALTDRLTEPSENLAF 197
           V F T  YF +        +T RGG +  QI A   + T P+E L+F
Sbjct: 151 VFFVTFHYFTLQADWIQHRYTVRGGWSTTQIRA---KATNPNERLSF 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,724,824
Number of Sequences: 37544
Number of extensions: 328019
Number of successful extensions: 601
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)