Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30224
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    24   1.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.1  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 26  DTREQSDRGETLRGIICKR 82
           DT+   + GE + GI+CK+
Sbjct: 86  DTKVMVEHGELVMGILCKK 104


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/48 (22%), Positives = 21/48 (43%)
 Frame = -2

Query: 224 NGTIRKFSIREFVFYLFIL*LGTFNNRINIHHKNIDIIQFNMTPVTRD 81
           +G +      E++  L        NN +N+ H N  I+  N+  + R+
Sbjct: 364 SGRVNNTQRNEYLLALSDRNQNVLNNDLNLEHVNFQILGANVNDLIRN 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,959
Number of Sequences: 438
Number of extensions: 4060
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)