Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30222
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   0.75 
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    25   4.0  
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    25   4.0  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   4.0  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    24   5.3  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    24   7.0  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    23   9.2  
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    23   9.2  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    23   9.2  
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    23   9.2  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 27.1 bits (57), Expect = 0.75
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 252  ALVNSKIIIAQVNVNMPRTFGDAIIHV 332
            +++N    IAQV +++PRT GD I+ V
Sbjct: 1228 SIINKIRKIAQVKIDVPRTPGDEIVVV 1254


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 53  RSEYVLAFWGYICRIL 6
           ++ Y+++ WG ICR+L
Sbjct: 602 QASYLISAWGRICRVL 617


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 42  IFRSVSLFMAANVRKSVAEGRSDAIPIFLQDIPKL 146
           +F      +AA V + VAEGR  AIP +     KL
Sbjct: 193 VFGDSGTTIAARVLELVAEGRGFAIPWYTSVCSKL 227


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 127 RKMGMASERPSATDLRTFAAINNDTD 50
           RKM    + PSAT+  + + IN D+D
Sbjct: 747 RKMDREQDLPSATNTASVSEINFDSD 772


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 191 LSPRQPWLLQSGHLRGLCQGRVG 259
           LSPRQ W+ + G      +GR+G
Sbjct: 206 LSPRQIWVTRHGESVDNVRGRIG 228


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 239 VHGGAQTAVAMVVGGRDL-DKSDVGLDDLPVEQLGDV 132
           V  G    +A  V  + L D SD+ + D  +E+ GDV
Sbjct: 336 VRAGFTKRLAKKVSSKSLSDVSDINISDEKIEKNGDV 372


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 204  NHGYCSLGTSVDCV 245
            NH Y  LGTS  CV
Sbjct: 1339 NHAYQVLGTSAQCV 1352


>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -2

Query: 295 FTFT*AMMILELTNAALTQSTEVPRLQ*PWLSGGETWIRAMSGWMIFLW 149
           F F   + ++ L   ALT S+    +  P + G +     +  W+ FLW
Sbjct: 238 FQFGAEVQVVSLLYTALTMSSIFLAIVAPKVEGAKRQTLFVIIWLAFLW 286


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 126 LQDIPKLFHRKIIQPDIALIQVSPPDNH 209
           L++IP    R  +Q  + +I  SPP  H
Sbjct: 87  LKNIPSDVTRSSVQKAVVVITTSPPFGH 114


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 227 AQTAVAMVVGGRDLDKSDVGLDDLPVEQLGDV-LKEDG 117
           A TA+A VV         VGLD + V+ +GDV +  DG
Sbjct: 29  ATTAIANVVKS---SLGPVGLDKMLVDDIGDVTVTNDG 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,314,455
Number of Sequences: 5004
Number of extensions: 22842
Number of successful extensions: 72
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)