Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30222
(332 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g27320.1 68414.m03328 histidine kinase (AHK3) identical to hi... 29 0.77
At1g51040.1 68414.m05737 phosphatidylinositol 4-kinase, putative... 29 1.0
At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to hi... 28 1.4
At2g35630.1 68415.m04369 microtubule organization 1 protein (MOR... 27 2.4
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 27 4.1
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 26 5.5
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 26 5.5
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 26 5.5
At1g12810.1 68414.m01488 proline-rich family protein contains pr... 26 5.5
At1g05640.1 68414.m00585 ankyrin repeat family protein contains ... 26 5.5
At5g62220.1 68418.m07813 exostosin family protein contains Pfam ... 26 7.2
At4g35520.1 68417.m05049 DNA mismatch repair family protein simi... 26 7.2
At3g43320.1 68416.m04579 hypothetical protein 26 7.2
At3g09990.1 68416.m01199 equilibrative nucleoside transporter, p... 26 7.2
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 26 7.2
At1g01970.1 68414.m00115 pentatricopeptide (PPR) repeat-containi... 26 7.2
At5g15020.1 68418.m01761 paired amphipathic helix repeat-contain... 25 9.5
At1g77400.1 68414.m09013 expressed protein 25 9.5
>At1g27320.1 68414.m03328 histidine kinase (AHK3) identical to
histidine kinase AHK3 [Arabidopsis thaliana]
gi|13537198|dbj|BAB40775
Length = 1036
Score = 29.1 bits (62), Expect = 0.77
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 100 PSATDLRTFAAINNDTDLNMSLHSGVTYA 14
PSA D RTF+ + T L SGV YA
Sbjct: 164 PSAIDQRTFSEYTDRTSFERPLTSGVAYA 192
>At1g51040.1 68414.m05737 phosphatidylinositol 4-kinase, putative
similar to phosphatidylinositol 4-kinase alpha [Daucus
carota] GI:3452273; contains Pfam profile PF00454:
Phosphatidylinositol 3- and 4-kinase
Length = 525
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 123 FLQDIPKLFHRKIIQPDIALIQVSPPDNHGYCSLGTSVDCVRAALVNSKIIIA 281
FLQ +PK FHR ++L +S YCS V C+ +V ++ A
Sbjct: 75 FLQTVPKSFHRSFWPYSLSLESISA----FYCSFLGYVSCLSQLMVEGYLLRA 123
>At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to
histidine kinase AHK2 [Arabidopsis thaliana]
gi|13537196|dbj|BAB40774
Length = 1176
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -2
Query: 100 PSATDLRTFAAINNDTDLNMSLHSGVTYA 14
PSA D RTF T+ L SGV YA
Sbjct: 303 PSAIDQRTFEEYTERTNFERPLTSGVAYA 331
>At2g35630.1 68415.m04369 microtubule organization 1 protein (MOR1)
identical to microtubule organization 1 protein
GI:14317953 from [Arabidopsis thaliana]
Length = 1978
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 227 AQTAVAMVVGGRDLDKSDVGLDDLPVEQLGDVLKEDGNG 111
A A+A VG R L++S LDD+ ++L +++ G G
Sbjct: 469 ALAAIAKSVGMRPLERSLEKLDDVRKKKLSEMIAGSGGG 507
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 134 HPQAVPQEDHPARHRSYPGLSPRQP 208
HP E+ P +SYP PRQP
Sbjct: 347 HPSGYNPEEPPYPQQSYPPNPPRQP 371
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -2
Query: 106 ERPSATDLRTFAAINNDTDLNMSLHSGVTYA 14
+ PSA D TFA T L SGV YA
Sbjct: 174 KNPSAIDQETFAEYTARTAFERPLLSGVAYA 204
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -2
Query: 106 ERPSATDLRTFAAINNDTDLNMSLHSGVTYA 14
+ PSA D TFA T L SGV YA
Sbjct: 197 KNPSAIDQETFAEYTARTAFERPLLSGVAYA 227
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -2
Query: 106 ERPSATDLRTFAAINNDTDLNMSLHSGVTYA 14
+ PSA D TFA T L SGV YA
Sbjct: 174 KNPSAIDQETFAEYTARTAFERPLLSGVAYA 204
>At1g12810.1 68414.m01488 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 129
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 125 PSGHPQAVPQEDHPARHRSYPGLSPRQPW 211
P G+P A P +P+ + G P QP+
Sbjct: 22 PPGYPSAPPPPGYPSPPSHHEGYPPPQPY 50
>At1g05640.1 68414.m00585 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 627
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +3
Query: 156 KIIQPDIALIQVSPPDNHGYCSLGTSVDCVRAALVNSKIIIAQVNVNMPRTFGDAIIHV 332
++++PD A++ V D+ G L T+ + R +V + +N+N GD + +
Sbjct: 308 ELVKPDPAILSVE--DSKGNTPLHTATNKGRIKIVRCLVSFDGINLNAMNKAGDTALDI 364
>At5g62220.1 68418.m07813 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 517
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 87 SVAEGRSDAIPIFLQDIPKLFHRKIIQ 167
S ++ R D+ +F+ D+PK+F+ I+Q
Sbjct: 112 SSSDERCDSGRVFVYDMPKIFNEVILQ 138
>At4g35520.1 68417.m05049 DNA mismatch repair family protein similar
to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL
protein homolog 3) {Homo sapiens}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF01119: DNA mismatch repair
protein, C-terminal domain
Length = 1151
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 131 GHPQAVPQEDHPARHRSYPGLSPRQPW 211
G P VP D A H+ LS RQ W
Sbjct: 1103 GRPTTVPLVDLKALHKQIAKLSGRQVW 1129
>At3g43320.1 68416.m04579 hypothetical protein
Length = 510
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 173 HRSYPGLSPRQPWLLQSGHLRGLC 244
H SYP LSP + GHLR C
Sbjct: 292 HYSYPWLSPHCQVCKKWGHLRDSC 315
>At3g09990.1 68416.m01199 equilibrative nucleoside transporter,
putative (ENT2) identical to putative equilibrative
nucleoside transporter ENT2 [Arabidopsis thaliana]
GI:16518991; contains similarity to SWISS-PROT:Q14542
equilibrative nucleoside transporter 2 (Equilibrative
nitrobenzylmercaptopurine riboside-insensitive
nucleoside transporter, Equilibrative NBMPR-insensitive
nucleoside transporter, Nucleoside transporter, ei-type,
36 kDa nucleolar protein HNP36, Hydrophobic nucleolar
protein, 36 kDa, Delayed-early response protein 12)
[Homo sapiens]; contains Pfam profile PF01733:
Nucleoside transporter
Length = 417
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 190 TWIRAMSGWMIFLWNSLGMS 131
T I GWMIFL + LG+S
Sbjct: 346 TGIYGSQGWMIFLMSVLGLS 365
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 185 DKSDVGLDDLPVEQLGDVLKEDG 117
+ SD ++ L +E LGDV +DG
Sbjct: 111 ESSDESINQLTIEYLGDVSDDDG 133
>At1g01970.1 68414.m00115 pentatricopeptide (PPR) repeat-containing
protein low similarity to 67 kD chloroplastic
RNA-binding protein RSP67.2 [Raphanus sativus]
GI:9755888; contains Pfam profile PF01535: PPR repeat
Length = 409
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 167 ARHRSYPGLSPRQPWLLQSGHLRGLC 244
ARHR Y + R P L++S HL LC
Sbjct: 21 ARHRLYHRMFRRNPLLVES-HLNRLC 45
>At5g15020.1 68418.m01761 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1377
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 185 DKSDVGLDDLPVEQLGDVLKEDGNGV 108
D S+ G D E +GD +D NGV
Sbjct: 1017 DASEAGEDASGTESIGDECSQDDNGV 1042
>At1g77400.1 68414.m09013 expressed protein
Length = 232
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 5/20 (25%)
Frame = +1
Query: 232 PWTVSG-----PRWLTPKSS 276
PWTVS PRW +PKSS
Sbjct: 191 PWTVSSRRSVSPRWESPKSS 210
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,255,713
Number of Sequences: 28952
Number of extensions: 133071
Number of successful extensions: 453
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -