Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30221
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51540.1 68414.m05801 kelch repeat-containing protein contain...    30   1.5  
At1g24480.1 68414.m03083 hypothetical protein                          29   3.5  
At5g42170.1 68418.m05133 family II extracellular lipase, putativ...    28   4.6  
At4g19090.1 68417.m02814 hypothetical protein contains Pfam doma...    28   4.6  
At2g01050.1 68415.m00010 hypothetical protein                          28   6.1  
At5g10690.1 68418.m01237 pentatricopeptide (PPR) repeat-containi...    27   8.1  
At3g20270.1 68416.m02567 lipid-binding serum glycoprotein family...    27   8.1  

>At1g51540.1 68414.m05801 kelch repeat-containing protein contains
            Pfam profile PF01344: Kelch motif
          Length = 1036

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +3

Query: 129  HTEVQWKVTKNSI-----TDMKHISTEKTLMVGKSAKE*MTSVVW 248
            H E  WKV  NSI     T  KH  T+K ++VG+  +  + ++ W
Sbjct: 938  HIEFAWKVVNNSIVIVGGTTEKHPETKKMVLVGEIFQFNLNTLKW 982


>At1g24480.1 68414.m03083 hypothetical protein
          Length = 239

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 218 RKGMNDLCGMDLVP-DPKIIKAALH 289
           R G+ND  GMDLVP  P ++K   H
Sbjct: 113 RVGVNDSVGMDLVPYPPLVVKGDFH 137


>At5g42170.1 68418.m05133 family II extracellular lipase, putative
           similar to family II lipase EXL3 [Arabidopsis thaliana]
           GI:15054386; contains InterPro Entry IPR001087 Lipolytic
           enzyme, G-D-S-L family
          Length = 319

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 344 KDKCGNKVNEIYPYIIQEIKPTLTELGIDTPE 439
           K +C  K+NE+      +I PTL  LG + P+
Sbjct: 202 KRRCSEKLNEVARNFNAKISPTLEALGKELPD 233


>At4g19090.1 68417.m02814 hypothetical protein contains Pfam domain,
           PF04578: Protein of unknown function, DUF594
          Length = 751

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 451 VAKLLRCVNTQFGESRLDLLNDVWVDFI 368
           +AK L+ V   FGE +  +L+ VW++F+
Sbjct: 687 LAKELQRVEKNFGEDKWKILSKVWLEFL 714


>At2g01050.1 68415.m00010 hypothetical protein
          Length = 515

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 231 MTSVVWISFPTQRLSKLPFMHADESMIMPLQSGL*KPAKTNVET 362
           +T+ VW+     RLS +P+ +    ++M +  GL +P K ++ T
Sbjct: 162 VTTPVWV-----RLSNIPYNYYHRCLLMEIARGLGRPLKVDMNT 200


>At5g10690.1 68418.m01237 pentatricopeptide (PPR) repeat-containing
           protein / CBS domain-containing protein contains CBS and
           PPR domain repeats
          Length = 580

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +2

Query: 227 MNDLCGMDLVPDPKIIKAALHACRRVNDYALAVRFIEACKDKCGNKVNEIYPYIIQEIKP 406
           ++++  + L PD       +HAC +  D   A++F    K+    K  E Y   +Q    
Sbjct: 213 LDEMLRLRLEPDRLTYNTLIHACIKCGDLDAAMKFFNDMKE----KAEEYYDDFLQPDVV 268

Query: 407 TLTEL 421
           T T L
Sbjct: 269 TYTTL 273


>At3g20270.1 68416.m02567 lipid-binding serum glycoprotein family
           protein similar to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 722

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 102 GSAPYLYGDHTEVQWKVTKNSITDMKHI--STEKTLMVGKSAKE*MTSVVWISFPT 263
           G  PY Y    +VQWKV +    D + +   +E   ++G  AK    ++ + S+P+
Sbjct: 184 GFLPYPYSRPIKVQWKVFEKLFVDFRDLLDHSEYCDLIG-IAKNKFQTIPYFSYPS 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,480,858
Number of Sequences: 28952
Number of extensions: 273068
Number of successful extensions: 699
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)