Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30220
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      29   0.51 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   3.6  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    26   4.8  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   6.3  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    26   6.3  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   8.3  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 4/116 (3%)
 Frame = -3

Query: 349 RLYFL--H*FPTLPQGIFVKQFSFLCQYSNQLNRSHCRFFQQEYRHSRIH*NPGLYQYPH 176
           RL+F+    FP L   IF    +F+  +S+ L  S  R  +  Y H         + +  
Sbjct: 20  RLFFVCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHHHTFTIEAFFYWFF 79

Query: 175 LLLYFGFSC-PFSLVSFCHLFQASFFPWPLIFLTSCLPSPI-FFPACINFQYFLIL 14
              +F   C  F +  F H + ++  P+   F    L S   F    ++F +F  L
Sbjct: 80  FFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLFTSLHFNFFFRL 135


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 241  IYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEERNQAILDFV 381
            I+  Y L ++  DI  +  + K  ++EL +   S   + NQ + DF+
Sbjct: 1201 IFQAYLLKEMPNDIVSQFEMLKSKQIELTVQMASYEGDLNQNLCDFL 1247


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 157 FSCPFSLVSFCHLFQASFFPWPLIFLTSCLPS 62
           F+  F+ V+F  +  + +F W L+FL   LP+
Sbjct: 722 FAQTFAFVTFNKVCTSQYFMWYLVFLPLVLPN 753


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 265 DLNTDIEKKIALQKFLEVELGISAKSTIEERNQAILDFVTKISVNTQTKDV 417
           D    +   IAL + + V  GI+ K+T +ERN+ I  F +K++      D+
Sbjct: 487 DKGLKLPPAIALVQSVVVPCGITNKTTDQERNE-IEGFCSKLADRLNAADI 536


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 268 LNTDIEKKIALQKFLEVELGISAKSTIEERNQAILDFVTKISVNTQT 408
           LN DI +        +V+  +   +++EE+N    +FVT IS   QT
Sbjct: 374 LNDDITQDELNSSNADVDEEVIETTSLEEKNVDNQEFVTSISNGNQT 420


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 199 DSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVEL 324
           D N      I +    NGY LT    D+ KK +++ +L + L
Sbjct: 233 DGNPNRGETIPLRMFLNGYALTPTFRDVNKKFSVRYYLSLIL 274


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = -3

Query: 346  LYFLH*FPTLPQGIFVKQFSFLCQ--YSNQLNRSHCRFFQQEYRHSRIH*NPGLYQYPHL 173
            +Y+++ F +   G+ +  F F+      N       + + +E   S    NP  Y Y  +
Sbjct: 890  VYWMY-FKSCSIGLILLYFFFIISGIMMNVATNVWLKHWSEENGKSSSELNPSPYFYLGI 948

Query: 172  LLYFGF-SCPF 143
             L+FGF SC F
Sbjct: 949  YLFFGFLSCAF 959


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.135    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,714
Number of Sequences: 5004
Number of extensions: 46181
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)