Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30220
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73340.1 68414.m08489 cytochrome P450 family protein similar ...    31   0.59 
At4g17890.1 68417.m02666 human Rev interacting-like family prote...    28   5.5  
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila...    27   9.6  

>At1g73340.1 68414.m08489 cytochrome P450 family protein similar to
           Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana];
           contains Pfam profile: PF00067 cytochrome P450
          Length = 512

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
 Frame = +1

Query: 193 DQDSNEFLNVD--ILVEKIYNGY-GLTDLNTDIEKKIALQKFLEVELGISAKSTIEERNQ 363
           DQ    FL V   ++++ + N   G   L  DI +K+A+   +   LG+S++S ++E +Q
Sbjct: 176 DQLKTHFLEVIPVVMLQTLSNFKDGEVVLLQDICRKVAIHLMVNQLLGVSSESEVDEMSQ 235

Query: 364 AILDFV 381
              DFV
Sbjct: 236 LFSDFV 241


>At4g17890.1 68417.m02666 human Rev interacting-like family protein
           / hRIP family protein contains InterPro accession
           IPR001164: Human Rev interacting-like protein (hRIP)
          Length = 413

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 23/88 (26%), Positives = 39/88 (44%)
 Frame = +1

Query: 193 DQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEERNQAIL 372
           D+   +F N   +    Y  +G  + N D+E K  LQKF       SA     +++ + +
Sbjct: 307 DEARKKFTNAKSISSAQY--FGDQNKNADLESKATLQKFAGSASISSADFYGHDQDDSNI 364

Query: 373 DFVTKISVNTQTKDVAQKNLFDKLNILG 456
           D      +N +    AQ++L   +NI G
Sbjct: 365 DITASDLIN-RLSFQAQQDLSSLVNIAG 391


>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
           to RNA helicase GB:A57514 GI:897915 from [Rattus
           norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 989

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 48  GKNMGEGRQEVKKIRGQGKKEA*KR*QKETSEKGQEKPK 164
           G++ G GR+E  + RG+  K   +R ++E  EKG++K K
Sbjct: 70  GEDKGRGRRERDRDRGKYLKRDRERRERE-KEKGRKKQK 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.135    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,272,228
Number of Sequences: 28952
Number of extensions: 222813
Number of successful extensions: 615
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)