Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30219
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0634 + 30746767-30747012,30747083-30747118,30747554-307478...    29   3.4  
07_03_0868 - 22157711-22157937,22158112-22158758,22158918-22159570     29   4.5  
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004...    29   4.5  
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807...    29   4.5  
09_04_0518 - 18261420-18261953,18262054-18262626,18262736-182629...    28   5.9  
04_04_0289 + 24167246-24167411,24167584-24167708,24167744-241686...    28   5.9  
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443...    28   7.8  

>01_06_0634 +
           30746767-30747012,30747083-30747118,30747554-30747850,
           30748482-30748544,30748643-30748696,30748837-30748854,
           30749554-30749625,30749731-30749787,30750160-30750236,
           30751013-30751094,30751585-30751701,30752083-30752210,
           30753074-30753143,30753725-30753765,30753963-30753990,
           30754151-30754210
          Length = 481

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 379 GVEFIHTTTWSHCGHPQCVSRDLFCHVPSGY 471
           G+ ++ T +W HCG+    +  L  HVP  Y
Sbjct: 444 GLAYLRTESWVHCGNGMKQAIGLKFHVPEEY 474


>07_03_0868 - 22157711-22157937,22158112-22158758,22158918-22159570
          Length = 508

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 285 RLCISFLNDKCSEELFEMIPTSRFYHRIARHRSRVH 392
           +LC+ FLN+ C +  +E+   +  +  +A+ +SR H
Sbjct: 262 QLCVWFLNESCGQMNWELKHQTHLWSLLAQLKSREH 297


>04_04_0824 -
           28399144-28399385,28400193-28400312,28400422-28400453,
           28400531-28400625,28400713-28400786,28400883-28401018,
           28401096-28401333,28401508-28401555,28401593-28401780,
           28401862-28401983,28402061-28402226,28402321-28402443,
           28403068-28403139,28403244-28403351,28404212-28404328,
           28404458-28404596,28404702-28404808,28404904-28405013,
           28405141-28405274,28405348-28405497,28405571-28405791,
           28405868-28406677,28410261-28410473
          Length = 1254

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 408 PRSSMDELYSGGGR-CDGKSEMSVSSRTIPQ 319
           PR  M + Y GG R   G+S  S SSRT+P+
Sbjct: 211 PRGGMPQPYYGGPRGSGGRSVPSGSSRTVPE 241


>04_01_0617 -
           8076624-8076971,8077761-8077883,8077965-8078035,
           8078108-8078360,8078613-8078768,8078854-8079770,
           8079858-8079927,8082310-8082416,8082722-8082755,
           8083621-8083940,8084031-8084820,8084890-8085046,
           8085647-8086068
          Length = 1255

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 427 QCVSRDLFCHVPSGYGMSSPPRCFPSAMTRPSSNEACG 540
           QCV++D        +   SPPRC  S+   P   E  G
Sbjct: 107 QCVAKDAAAQPEMSWPRGSPPRCPSSSCPEPQRQEFGG 144


>09_04_0518 -
           18261420-18261953,18262054-18262626,18262736-18262948,
           18263379-18263510,18263591-18263731,18263899-18264120
          Length = 604

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +3

Query: 402 YVEPLRSSTVRFQRSFLPRTI---RLWNELPSTVFPERYDTSLFKRG 533
           Y+EP R++ V    + L +TI   + W+E   T+F  +++T LF  G
Sbjct: 338 YMEPQRAAFVGVAPATLAQTILQHKRWSEGNFTIFLSKHNTFLFGHG 384


>04_04_0289 +
           24167246-24167411,24167584-24167708,24167744-24168694,
           24168788-24168940,24169251-24169475,24170102-24170587
          Length = 701

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 349 DVGI-ISNNSSEHLSFKNEIHNRMSYIFPSLLHPKNV 242
           DVG+ I N S+++ +  ++ + R   +  SLL PKN+
Sbjct: 72  DVGVGIGNESNDYAAAASQTNRRYGQVVRSLLLPKNI 108


>02_05_0812 +
           31942591-31942758,31943415-31943491,31944169-31944327,
           31944559-31944772,31944849-31944935,31945022-31945161,
           31945380-31945460,31945948-31946012,31946219-31946394,
           31947212-31947342,31947438-31947525,31947671-31947884,
           31948206-31948312,31948456-31948953
          Length = 734

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 534 LWRVLSGRQRLGSAPWHC*SSWATVTIRWAV 626
           +W  L+GR++ G   +   S W+T  + WAV
Sbjct: 54  IWTTLTGREKGGIGFFWSWSYWSTFILTWAV 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,364,839
Number of Sequences: 37544
Number of extensions: 479647
Number of successful extensions: 1239
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)