Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30219
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    29   2.3  
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U41545-7|AAK39136.1|  687|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z92831-3|CAC70085.1|  276|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z66520-8|CAE17837.1|  357|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z66515-4|CAA91350.1|  153|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical protein
            F46H5.4 protein.
          Length = 2018

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = -1

Query: 301  NEIHNRMSYIFPSLLHPKNVVAIKDSLISFIYRLTSPREGEGARRGDTHSNSHIHTSPYK 122
            NEI NR+   + ++    NVV +KDS    + +L      E A    T  + ++  +   
Sbjct: 1761 NEISNRLETFYTNMYGEGNVVVLKDSKPVQLEKLNP----EKAYIQITFVDVYLSDNEKM 1816

Query: 121  GNTTYFFSNNKINK 80
              TTYF   N +N+
Sbjct: 1817 ERTTYFTRRNNVNR 1830


>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 148 SHIHTSPYKGNTTYFFSNNKINK*THTHT*FVLSYRYFVCEH*IVKLI 5
           S + + P+   T  FF   +I++ THTHT  V    +F+  H ++ L+
Sbjct: 32  SSLASLPFSKTTPSFF---QIHRHTHTHTILVFVVHFFISIHLVLSLL 76


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -2

Query: 360 GKSEMSVSSRTIPQST-CRSRTKYI--TG*VIFFRHFCIRRTLSQLK 229
           GK ++  S     Q T  RS+ KY+  TG     RHF + RTLS +K
Sbjct: 280 GKVDLKTSEFFEQQETHTRSKKKYVWRTGKTKLRRHFFVNRTLSTMK 326


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
           protein ZK1067.2 protein.
          Length = 2219

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 172 RRGDTHSNSHIHTSPYKGNTTY 107
           R G  H   H  TSP+K NTTY
Sbjct: 633 RNGSLHFAVHEETSPFKPNTTY 654


>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical
           protein C38D4.3 protein.
          Length = 1784

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = -1

Query: 349 DVGIISNNSSEHLSFKNEIHNRMSYIFPSLLHPKNVVAIKDSLISFI 209
           D+GI++N +++  SF + + +     +PS L  + V   K++ I ++
Sbjct: 447 DIGILTNEATDVSSFSSMVSDADQLFYPSALSFERVFVAKNTRIDWM 493


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 394 HTTTWSHCGHPQCVSRDLFCH 456
           +   WS C HP CV+  +F H
Sbjct: 8   NVVNWSRCVHPSCVAWVIFIH 28


>U41545-7|AAK39136.1|  687|Caenorhabditis elegans Hypothetical
           protein C02F12.8 protein.
          Length = 687

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 421 HPQCVSRDLFCHVPSGYGMSSPPRCFPSAMT 513
           HPQ V++ +  HVP G    +PP+  P+  T
Sbjct: 162 HPQIVNQPMHPHVPVGSQNYNPPQFVPAPPT 192


>Z92831-3|CAC70085.1|  276|Caenorhabditis elegans Hypothetical
           protein F22G12.6 protein.
          Length = 276

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -1

Query: 568 PSRCLPLNT--LHKPRLKRDVS*R-SGNTVEGSSFHSRMVRGKKDLWK 434
           PSR L L +  L KPR   DV+ + +GN+++    H  ++  + D WK
Sbjct: 46  PSRLLSLTSSLLEKPRFS-DVTFKFAGNSLKSVPAHKYVLAARTDFWK 92


>Z66520-8|CAE17837.1|  357|Caenorhabditis elegans Hypothetical
           protein F49E12.12 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 10  ISQFNVHRQNICMTKRIMCVCVFIYLFYC*KKSMLYFLYMDLYVY-VSWSA 159
           +  ++V+R+N  + +R+ C+ +F +      K  + FLY    +Y   W A
Sbjct: 228 LESYDVNRKNSRVLERVFCIALFAFCLPVVCKDYISFLYTYPCLYHTEWPA 278


>Z66515-4|CAA91350.1|  153|Caenorhabditis elegans Hypothetical
           protein R53.4 protein.
          Length = 153

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 348 SRFYHRIARHRSRVHPYYYVEPLRSSTVR 434
           S FY+   R+  RVH  YY  P+ ++TV+
Sbjct: 94  SAFYNEFMRNIWRVHNLYYSGPVYNNTVK 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,129,369
Number of Sequences: 27780
Number of extensions: 399062
Number of successful extensions: 967
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)