Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30216
         (573 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   4.3  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   5.6  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   7.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.5  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 4   FWSFHCDSVISVRSGSRALLIVVSALD 84
           FW FHC  +  +  G   +L V +  D
Sbjct: 666 FWLFHCHFLFHIVIGMNLVLQVGTHAD 692


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 165 WGGGIEDSWPRSSTNADSTATVYSPG 242
           +GG  E  W + + NAD+    +  G
Sbjct: 219 YGGVNESDWQQQNRNADAAIRYWLDG 244


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 177 IEDSWPRSSTNADSTATVYSPGLG 248
           + D  P  + N D  ++V SPG G
Sbjct: 132 LADITPNVTPNCDVKSSVCSPGSG 155


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 177 IEDSWPRSSTNADSTATVYSPGLG 248
           + D  P  + N D  ++V SPG G
Sbjct: 132 LADITPNVTPNCDVKSSVCSPGSG 155


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 242 AGHADQLLGGEEVSDGRDR 298
           A H DQ +G E++   RD+
Sbjct: 932 AYHGDQWVGFEDIKSVRDK 950


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 177 IEDSWPRSSTNADSTATVYSPGLG 248
           + D  P  + N D  ++V SPG G
Sbjct: 132 LADITPNVTPNCDVKSSVCSPGSG 155


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,641
Number of Sequences: 336
Number of extensions: 1678
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)