Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30216
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   2.0  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   2.0  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    26   3.4  
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3...    26   4.5  

>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 204 TNADSTATVYSPGLGTLTSCWAEKKSRTGATVCTAVSTGGTLVSS 338
           T A STA+VY P   T+ S     ++ +G T  TA ST  + V+S
Sbjct: 613 TLATSTASVYDP---TVMSAATTSRAPSGTTSGTASSTTSSSVAS 654


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 204 TNADSTATVYSPGLGTLTSCWAEKKSRTGATVCTAVSTGGTLVSS 338
           T A STA+VY P   T+ S     ++ +G T  TA ST  + V+S
Sbjct: 613 TLATSTASVYDP---TVMSAATTSRAPSGTTSGTASSTTSSSVAS 654


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 422 VETSSSXLRRLPPHLAPVL 366
           VET  + +RRL P LAP+L
Sbjct: 486 VETIDTTIRRLDPSLAPIL 504


>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 210 RSWTSAASY-PLFLLPRSVKLLILLEVALEV 121
           +SW   + Y P+ L     K+L LLE ALEV
Sbjct: 9   QSWVEKSKYVPVRLSDEERKILSLLEAALEV 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,787,189
Number of Sequences: 5004
Number of extensions: 26938
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)