Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30216
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0220 - 6531255-6532667                                           31   0.86 
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281     28   6.1  
03_02_0451 - 8606376-8607152                                           27   8.0  

>03_02_0220 - 6531255-6532667
          Length = 470

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = -3

Query: 328 NVPPVLTAVQTVAPVRDFFSAQQLV-SVPSPGLYT-VAVESAFVD 200
           +VP V+T+V  +A   DF  A+QL+  +P  G  T VAV +A +D
Sbjct: 186 SVPLVVTSVHKLATAGDFVGARQLIEKMPEFGCVTNVAVYTALLD 230


>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
          Length = 518

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +3

Query: 198 SSTNADSTATVYSPGLGTLTSCWAEKKSRTGATVCTAVSTGGTLVSST 341
           + +N+ S  +V     G+ +S W+   S +G+T+ + +       SS+
Sbjct: 394 AESNSGSATSVTGANSGSYSSAWSNSNSNSGSTMPSGIGVASNAGSSS 441


>03_02_0451 - 8606376-8607152
          Length = 258

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +3

Query: 162 SWGGGIEDSWPRSSTNADSTATVYSPGLGTLTSCWAEKKSRTGATVCTAVSTGGTLVSS 338
           S GG + D     S+++ + A V SP L      W E  +         ++ GGT  SS
Sbjct: 182 SGGGDVLDHATTPSSSSSAAANVCSPPLEGDHELWTELDAFASPKFMDLMAAGGTAFSS 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,384,601
Number of Sequences: 37544
Number of extensions: 207252
Number of successful extensions: 640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)