Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30216
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43703| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=5.4)           31   0.51 
SB_44568| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_55283| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               28   6.2  
SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_7972| Best HMM Match : RVT_1 (HMM E-Value=5.8e-29)                  27   8.2  
SB_38467| Best HMM Match : RVT_1 (HMM E-Value=4.2e-05)                 27   8.2  

>SB_43703| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=5.4)
          Length = 487

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 316 VLTAVQTVAPVRDFFSAQQLVSVPSPGLYTVAVESAFVD 200
           V +  QTV P  D+FSA  L+S  +   Y V V ++ +D
Sbjct: 379 VTSLEQTVTPHNDYFSAHFLLSFAAAATYDVTVTTSVID 417


>SB_44568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 452 PPYCHIYREAVETSSSXLRRLPPHLAPVLSQSRSS 348
           PP  H+   AVE SS  L R+P H AP+ + S  S
Sbjct: 363 PPGQHVADHAVEVSSRVLARVPIH-APLTAASTVS 396


>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2484

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 108 FIEVKLLMRLPTRLKV*RSWGGGIEDSWPRSSTNADS 218
           F+E  L +  P  ++    W G +E +W R+ST   S
Sbjct: 738 FVEFLLSLGWPVDIETHPGWTGNVERAWVRTSTRERS 774


>SB_55283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1342

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 204 WTSAASYPLFLLPRSVKLLILLEVALEVSLQ*NIDKNEASI 82
           W  AASYPLF L + +   + + V L+   +  +D+N   I
Sbjct: 378 WREAASYPLFNLLKEMSSYVFVCVNLQGKQEELVDENRQLI 418


>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 1775

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +3

Query: 138 PTRLKV*RSWGGGIEDSWPRSSTNADSTATVYSPGLGTLTSCWAEKKSRTGATVCTAVST 317
           P + KV +S GG ++++   +     +T     PG+  L+    EK  ++G  V  ++S 
Sbjct: 483 PQKTKVVKSTGGSVQNTKKTTKMVKGATLKRKRPGIKALSKQTPEKHLKSGKKVEKSISP 542

Query: 318 GGTLVS 335
              L+S
Sbjct: 543 SLQLLS 548


>SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 289 PVRDFFSAQQLVSVPSPGLYTVAVESAFVDERGQLSSIPP 170
           P R   SA  ++S P   LY  ++ES  V ++ +++ + P
Sbjct: 38  PTRVLKSASSILSKPLAMLYNFSIESGIVPDKFKIAKVIP 77


>SB_7972| Best HMM Match : RVT_1 (HMM E-Value=5.8e-29)
          Length = 382

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 289 PVRDFFSAQQLVSVPSPGLYTVAVESAFVDERGQLSSIPP 170
           P R   SA  ++S P   LY  ++ES  V ++ +++ + P
Sbjct: 118 PTRVLKSASSILSKPLAMLYNFSIESGIVPDKFKIAKVIP 157


>SB_38467| Best HMM Match : RVT_1 (HMM E-Value=4.2e-05)
          Length = 400

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 289 PVRDFFSAQQLVSVPSPGLYTVAVESAFVDERGQLSSIPP 170
           P R   SA  ++S P   LY  ++ES  V ++ +++ + P
Sbjct: 123 PTRILKSASSILSKPLAMLYNFSIESGIVPDKFKIAKVIP 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,820,497
Number of Sequences: 59808
Number of extensions: 221785
Number of successful extensions: 662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)