Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30216
         (573 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D15049-1|BAA03645.2| 1117|Homo sapiens protein tyrosine phosphat...    33   0.71 
BC111716-1|AAI11717.1| 1115|Homo sapiens protein tyrosine phosph...    33   0.71 
BC111715-1|AAI11716.1|  937|Homo sapiens PTPRH protein protein.        33   0.71 
AF275150-1|AAF91411.1| 1115|Homo sapiens transmembrane-type prot...    33   0.71 
BC032542-1|AAH32542.2| 1084|Homo sapiens fucokinase protein.           30   6.7  
BC013735-1|AAH13735.1| 1032|Homo sapiens FUK protein protein.          30   6.7  
AY829643-1|AAV67949.1| 1084|Homo sapiens fucokinase protein.           30   6.7  
AK128387-1|BAC87413.1| 1090|Homo sapiens protein ( Homo sapiens ...    30   6.7  
AK096727-1|BAC04852.1|  813|Homo sapiens protein ( Homo sapiens ...    30   6.7  
AK056456-1|BAB71190.1|  990|Homo sapiens protein ( Homo sapiens ...    30   6.7  
AJ441184-1|CAD29647.1|  990|Homo sapiens L-fucose kinase protein.      30   6.7  
BC033918-1|AAH33918.1|  962|Homo sapiens INTS7 protein protein.        29   8.8  
BC030716-1|AAH30716.1|  962|Homo sapiens integrator complex subu...    29   8.8  
BC020523-1|AAH20523.1|  948|Homo sapiens INTS7 protein protein.        29   8.8  
AK022589-1|BAB14116.1|  547|Homo sapiens protein ( Homo sapiens ...    29   8.8  
AK022509-1|BAB14067.1|  962|Homo sapiens  TRAP100 mRNA.  protein.      29   8.8  
AK001598-1|BAA91779.1|  962|Homo sapiens protein ( Homo sapiens ...    29   8.8  

>D15049-1|BAA03645.2| 1117|Homo sapiens protein tyrosine phosphatase
           precursor protein.
          Length = 1117

 Score = 33.1 bits (72), Expect = 0.71
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = +3

Query: 168 GGGIEDSWPRSSTNADSTATVYSPGLGTLTSCWAEKKSRTGATVCTAVSTGGTLVSS 338
           GGG E    R++TN   TA    PG     S WAEK    G+    ++ST    V+S
Sbjct: 429 GGGTET---RNTTNTSVTAERLEPGTLYTFSVWAEKNGARGSRQNVSISTVPNAVTS 482


>BC111716-1|AAI11717.1| 1115|Homo sapiens protein tyrosine
           phosphatase, receptor type, H, precursor protein.
          Length = 1115

 Score = 33.1 bits (72), Expect = 0.71
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = +3

Query: 168 GGGIEDSWPRSSTNADSTATVYSPGLGTLTSCWAEKKSRTGATVCTAVSTGGTLVSS 338
           GGG E    R++TN   TA    PG     S WAEK    G+    ++ST    V+S
Sbjct: 427 GGGTET---RNTTNTSVTAERLEPGTLYTFSVWAEKNGARGSRQNVSISTVPNAVTS 480


>BC111715-1|AAI11716.1|  937|Homo sapiens PTPRH protein protein.
          Length = 937

 Score = 33.1 bits (72), Expect = 0.71
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = +3

Query: 168 GGGIEDSWPRSSTNADSTATVYSPGLGTLTSCWAEKKSRTGATVCTAVSTGGTLVSS 338
           GGG E    R++TN   TA    PG     S WAEK    G+    ++ST    V+S
Sbjct: 249 GGGTET---RNTTNTSVTAERLEPGTLYTFSVWAEKNGARGSRQNVSISTVPNAVTS 302


>AF275150-1|AAF91411.1| 1115|Homo sapiens transmembrane-type protein
           tyrosine phosphatase H protein.
          Length = 1115

 Score = 33.1 bits (72), Expect = 0.71
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = +3

Query: 168 GGGIEDSWPRSSTNADSTATVYSPGLGTLTSCWAEKKSRTGATVCTAVSTGGTLVSS 338
           GGG E    R++TN   TA    PG     S WAEK    G+    ++ST    V+S
Sbjct: 427 GGGTET---RNTTNTSVTAERLEPGTLYTFSVWAEKNGARGSRQNVSISTVPNAVTS 480


>BC032542-1|AAH32542.2| 1084|Homo sapiens fucokinase protein.
          Length = 1084

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -3

Query: 301 QTVAPVRDFFSAQQLVSVPSPGLYTVAVESAFVDERGQLSSIPP 170
           Q V   + F S +Q V +P PG + VA   A VD  G  S  PP
Sbjct: 684 QAVMSAQHFVSTEQ-VELPGPGQWVVAECPARVDFSGGWSDTPP 726


>BC013735-1|AAH13735.1| 1032|Homo sapiens FUK protein protein.
          Length = 1032

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -3

Query: 301 QTVAPVRDFFSAQQLVSVPSPGLYTVAVESAFVDERGQLSSIPP 170
           Q V   + F S +Q V +P PG + VA   A VD  G  S  PP
Sbjct: 632 QAVMSAQHFVSTEQ-VELPGPGQWVVAECPARVDFSGGWSDTPP 674


>AY829643-1|AAV67949.1| 1084|Homo sapiens fucokinase protein.
          Length = 1084

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -3

Query: 301 QTVAPVRDFFSAQQLVSVPSPGLYTVAVESAFVDERGQLSSIPP 170
           Q V   + F S +Q V +P PG + VA   A VD  G  S  PP
Sbjct: 684 QAVMSAQHFVSTEQ-VELPGPGQWVVAECPARVDFSGGWSDTPP 726


>AK128387-1|BAC87413.1| 1090|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46530 fis, clone THYMU3036200. ).
          Length = 1090

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -3

Query: 301 QTVAPVRDFFSAQQLVSVPSPGLYTVAVESAFVDERGQLSSIPP 170
           Q V   + F S +Q V +P PG + VA   A VD  G  S  PP
Sbjct: 716 QAVMSAQHFVSTEQ-VELPGPGQWVVAECPARVDFSGGWSDTPP 758


>AK096727-1|BAC04852.1|  813|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39408 fis, clone PLACE6013672. ).
          Length = 813

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -3

Query: 301 QTVAPVRDFFSAQQLVSVPSPGLYTVAVESAFVDERGQLSSIPP 170
           Q V   + F S +Q V +P PG + VA   A VD  G  S  PP
Sbjct: 413 QAVMSAQHFVSTEQ-VELPGPGQWVVAECPARVDFSGGWSDTPP 455


>AK056456-1|BAB71190.1|  990|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31894 fis, clone NT2RP7003647. ).
          Length = 990

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -3

Query: 301 QTVAPVRDFFSAQQLVSVPSPGLYTVAVESAFVDERGQLSSIPP 170
           Q V   + F S +Q V +P PG + VA   A VD  G  S  PP
Sbjct: 590 QAVMSAQHFVSTEQ-VELPGPGQWVVAECPARVDFSGGWSDTPP 632


>AJ441184-1|CAD29647.1|  990|Homo sapiens L-fucose kinase protein.
          Length = 990

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -3

Query: 301 QTVAPVRDFFSAQQLVSVPSPGLYTVAVESAFVDERGQLSSIPP 170
           Q V   + F S +Q V +P PG + VA   A VD  G  S  PP
Sbjct: 590 QAVMSAQHFVSTEQ-VELPGPGQWVVAECPARVDFSGGWSDTPP 632


>BC033918-1|AAH33918.1|  962|Homo sapiens INTS7 protein protein.
          Length = 962

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 301 QTVAPVRDFFSAQQLVSVPSPGLYTVAVESAFVDERG 191
           Q V P  D+FS Q L++    G + + VES+  D  G
Sbjct: 879 QRVEPHNDYFSTQFLLNFAILGTHNITVESSVKDANG 915


>BC030716-1|AAH30716.1|  962|Homo sapiens integrator complex subunit
           7 protein.
          Length = 962

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 301 QTVAPVRDFFSAQQLVSVPSPGLYTVAVESAFVDERG 191
           Q V P  D+FS Q L++    G + + VES+  D  G
Sbjct: 879 QRVEPHNDYFSTQFLLNFAILGTHNITVESSVKDANG 915


>BC020523-1|AAH20523.1|  948|Homo sapiens INTS7 protein protein.
          Length = 948

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 301 QTVAPVRDFFSAQQLVSVPSPGLYTVAVESAFVDERG 191
           Q V P  D+FS Q L++    G + + VES+  D  G
Sbjct: 865 QRVEPHNDYFSTQFLLNFAILGTHNITVESSVKDANG 901


>AK022589-1|BAB14116.1|  547|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12527 fis, clone NT2RM4000086. ).
          Length = 547

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 301 QTVAPVRDFFSAQQLVSVPSPGLYTVAVESAFVDERG 191
           Q V P  D+FS Q L++    G + + VES+  D  G
Sbjct: 464 QRVEPHNDYFSTQFLLNFAILGTHNITVESSVKDANG 500


>AK022509-1|BAB14067.1|  962|Homo sapiens  TRAP100 mRNA.  protein.
          Length = 962

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 301 QTVAPVRDFFSAQQLVSVPSPGLYTVAVESAFVDERG 191
           Q V P  D+FS Q L++    G + + VES+  D  G
Sbjct: 879 QRVEPHNDYFSTQFLLNFAILGTHNITVESSVKDANG 915


>AK001598-1|BAA91779.1|  962|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10736 fis, clone NT2RP3001420. ).
          Length = 962

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 301 QTVAPVRDFFSAQQLVSVPSPGLYTVAVESAFVDERG 191
           Q V P  D+FS Q L++    G + + VES+  D  G
Sbjct: 879 QRVEPHNDYFSTQFLLNFAILGTHNITVESSVKDANG 915


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,725,398
Number of Sequences: 237096
Number of extensions: 1118158
Number of successful extensions: 3218
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3218
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)