Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30216
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047665-3|AAC04456.3|  566|Caenorhabditis elegans Hypothetical ...    28   5.4  
U88170-4|AAB42245.2|  425|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    27   7.2  

>AF047665-3|AAC04456.3|  566|Caenorhabditis elegans Hypothetical
           protein T23E1.1 protein.
          Length = 566

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 116 FNKTLIKTKPRSRALTTMSSALDPDLTLITLS 21
           +NKT     PRS  LT +SS+ D  L ++++S
Sbjct: 172 YNKTFFNFLPRSETLTNLSSS-DESLMILSIS 202


>U88170-4|AAB42245.2|  425|Caenorhabditis elegans Hypothetical
           protein C10G11.6 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 253 SVPSPGLYTVAVESAFVDERGQLSSIPPPQE 161
           S+P PGL  + V   FV  R      P P E
Sbjct: 380 SLPPPGLVGINVRGLFVGNRSNRQQTPEPDE 410


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
 Frame = +3

Query: 198  SSTNADSTATVYSPGLGTL------TSCWAEKKSRTGATVCT-AVSTGGTLVSSTVCGRP 356
            SST   ST T+ S   GT+      +S  A   S+TG+TV   + ST G   SS    +P
Sbjct: 1512 SSTAPSSTGTMSSTSSGTVGSTISESSTTASASSQTGSTVTMGSSSTSGVSTSSASSTQP 1571

Query: 357  GL*EDGGEVRG 389
             +    G   G
Sbjct: 1572 QMSTSQGSSAG 1582


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
 Frame = +3

Query: 198 SSTNADSTATVYSPGLGTLTSCWAEKKSRTGATVCTAVSTGGTLVSSTVCGRPGL*E--- 368
           SST +DST +  +PG    T   +   + +G+T  T  ST      ST    PG  E   
Sbjct: 706 SSTISDSTGSTNAPGSTESTVTGSSVSTVSGSTGSTGPSTMSASTGST--NTPGSTESTI 763

Query: 369 -DGGEVRGEAPET 404
            DG  V G    T
Sbjct: 764 TDGSTVSGSTGST 776


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,047,410
Number of Sequences: 27780
Number of extensions: 161297
Number of successful extensions: 482
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)