Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30216
         (573 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18880.1 68418.m02243 expressed protein ; expression supporte...    28   5.1  
At4g22280.2 68417.m03223 F-box family protein contains Pfam prof...    27   8.9  
At4g22280.1 68417.m03222 F-box family protein contains Pfam prof...    27   8.9  

>At5g18880.1 68418.m02243 expressed protein ; expression supported
           by MPSS
          Length = 295

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 117 VKLLMRLPTRLKV*RSWGGGIEDSWPRSSTNADST 221
           +  L RLPTR ++ R WG  I  SW   S N D T
Sbjct: 146 MSFLERLPTRDRL-RGWGMNIPSSWVLCS-NGDET 178


>At4g22280.2 68417.m03223 F-box family protein contains Pfam profile
           PF00646: F-box domain
          Length = 332

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 546 IXYCRVLTINRLYIITMHSEMHYYSAGLGNSTTVLPYLPRS 424
           I +CR ++ + L  +T+ S  HY   G+   T  L YL  S
Sbjct: 190 IEFCRTVSSSTLKKLTITSSFHYEYWGITIDTPSLAYLEYS 230


>At4g22280.1 68417.m03222 F-box family protein contains Pfam profile
           PF00646: F-box domain
          Length = 415

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 546 IXYCRVLTINRLYIITMHSEMHYYSAGLGNSTTVLPYLPRS 424
           I +CR ++ + L  +T+ S  HY   G+   T  L YL  S
Sbjct: 190 IEFCRTVSSSTLKKLTITSSFHYEYWGITIDTPSLAYLEYS 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,595,930
Number of Sequences: 28952
Number of extensions: 155116
Number of successful extensions: 397
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)