Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30215
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    29   0.58 
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   1.8  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    27   1.8  
SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase |S...    26   4.1  
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom...    26   4.1  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    26   5.4  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   9.5  

>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 18/78 (23%), Positives = 35/78 (44%)
 Frame = +2

Query: 296 CMNGTCLCEIRYSGEGCAGPNLPYHACIGGVFLVVAFVCAVQLMICVVTEYRKLKAPTFL 475
           C+  T +    + G     P   +   IG +     F+ A+  +ICV+T    ++ P++L
Sbjct: 98  CLISTIMTIFAHIGAIARSPG--FFNVIGTITFFNIFITAIAFVICVITFVPHIQWPSWL 155

Query: 476 RACKVTTQKMLYLVAFLA 529
               V  Q ++ L+  +A
Sbjct: 156 VLANVGIQLIVLLLLLVA 173


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 392 LVVAFVCAVQLMICVVTEYRKLKAPTFLRACKVTTQKMLYLVAFL 526
           +V    C + L +C++  ++KL A   L    V   + ++L  F+
Sbjct: 673 VVFPIFCGILLSMCLIGTFKKLAAENLLNVMTVYPAQSIFLAWFI 717


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 148 LAEILVVGISTISFH*TQFRRQSLLHFINRMKTILAD 38
           ++E  V GI +   H +  + Q L H+I  M+ +LAD
Sbjct: 120 ISETSVSGIMSTCTHGSSLQHQVLPHYIKSMRIMLAD 156


>SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 419 QLMICVVTEYRKLKAPTFLRACKVTTQKMLYLV 517
           + +I +  E R+ +    +  CKVTT++M +LV
Sbjct: 16  KFLIVLDDETRENEGDLIIAGCKVTTEQMAFLV 48


>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 217

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -3

Query: 408 TKATTRKTPPIHA*YGRLGPAQPSPEYRISQRQVP 304
           T + TRK  P H  + RL P   S   R S   VP
Sbjct: 38  TSSATRKHDPFHKLWDRLQPKAQSTIQRTSSLPVP 72


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 377 IGGVFLVVAFVCAVQLMICVVTEYRKLK 460
           +GG FL+V  +    L I V+T Y   K
Sbjct: 246 VGGFFLIVILIIPETLPIKVITRYENAK 273


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
 Frame = +2

Query: 512  LVAFLASLIR---------GAYFVSPSAFQXGWATSLLSAYYPLLMSGS 631
            LVA LASL R         G  F +P   Q  W TS +  Y P L  G+
Sbjct: 2236 LVALLASLSRYHSWILPILGLGFGAPRWLQTLWGTSNIGIYVPFLGKGA 2284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,989
Number of Sequences: 5004
Number of extensions: 41252
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)