Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30215
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0527 + 3960982-3961290,3961371-3961464,3961898-3962084,396... 34 0.085
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 30 1.4
11_02_0113 + 8453628-8453820,8453970-8454941,8455031-8455644 29 2.4
09_04_0616 + 18977421-18977907,18977984-18978245,18978903-18979149 29 2.4
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588... 29 2.4
06_03_1210 + 28442253-28442967,28443338-28443405 29 3.2
11_08_0089 - 28288129-28288832,28290702-28290831,28291563-282918... 29 4.2
03_05_0577 - 25777457-25778155 29 4.2
08_02_1204 - 25267546-25268219,25268319-25268452,25269567-252696... 28 5.6
05_04_0259 + 19494629-19495394,19495408-19495949 28 5.6
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435... 28 7.4
05_01_0587 + 5273650-5273740,5273861-5273924,5274001-5274302,527... 28 7.4
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 28 7.4
08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413... 27 9.8
06_03_1373 + 29667871-29668782,29668872-29669851,29670156-296703... 27 9.8
>03_01_0527 +
3960982-3961290,3961371-3961464,3961898-3962084,
3962194-3962449,3962561-3962773,3962856-3962942,
3963089-3963223,3963296-3963409,3963507-3963754,
3963824-3963904,3963979-3964210,3964340-3964438,
3964513-3964701,3964928-3965023
Length = 779
Score = 34.3 bits (75), Expect = 0.085
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 266 CALSCSGRGDCMNGTCLCEIRYSGEGCAGPN 358
C CSG G C G C C+ Y G C+ P+
Sbjct: 266 CINQCSGHGHCRGGFCQCDGGYFGIDCSMPS 296
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 266 CALSCSGRGDCM-NGTCLCEIRYSGEGCA 349
C C+G G C NG C CE ++G C+
Sbjct: 568 CPAKCTGHGICKANGICECESGWTGIDCS 596
>11_02_0113 + 8453628-8453820,8453970-8454941,8455031-8455644
Length = 592
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/79 (26%), Positives = 30/79 (37%)
Frame = -3
Query: 390 KTPPIHA*YGRLGPAQPSPEYRISQRQVPFMXXXXXXXXXXXXXXXXXXXXXXXXXXANN 211
+ PP H G G ++ +P R SQR+ P + NN
Sbjct: 360 RDPPYHNPAGTNGMSKETPSRRFSQRR-PCLIQKIHINVPLLDAMQVPTYARYLKDILNN 418
Query: 210 ERMLRPATETAAIYHSCSN 154
+R+L P TE + CSN
Sbjct: 419 KRLL-PTTEVVKLTEHCSN 436
>09_04_0616 + 18977421-18977907,18977984-18978245,18978903-18979149
Length = 331
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/40 (30%), Positives = 15/40 (37%)
Frame = +2
Query: 263 GCALSCSGRGDCMNGTCLCEIRYSGEGCAGPNLPYHACIG 382
GC G G C G C + G G A P + +G
Sbjct: 82 GCVFDADGAGVCQTGDCGGRVECRGAGAAPPATLFEVTLG 121
>03_02_0142 +
5877480-5879663,5879783-5879898,5880749-5882419,
5882570-5882618,5882703-5882941,5883073-5883174,
5883634-5883862
Length = 1529
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 629 IQTSTGDNKPIEDWSPIXLEKQ 564
+Q++T DN P E+WS + +KQ
Sbjct: 322 LQSTTSDNSPKEEWSGLSFQKQ 343
>06_03_1210 + 28442253-28442967,28443338-28443405
Length = 260
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 263 GCALSCSGRGDCMNGTCLCEIRYSGEGCAGP 355
GC+ +GRG C G C + +G G A P
Sbjct: 79 GCSFDAAGRGRCATGDCGGALYCNGAGGAPP 109
>11_08_0089 -
28288129-28288832,28290702-28290831,28291563-28291856,
28292000-28292098,28292199-28292285,28292524-28292805
Length = 531
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 263 GCALSCSGRGDCMNGTCLCEIRYSGEGCAGP 355
GC+ GRG C G C +R +G A P
Sbjct: 362 GCSFDSRGRGSCATGDCGGVLRCNGAAGATP 392
>03_05_0577 - 25777457-25778155
Length = 232
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 263 GCALSCSGRGDCMNGTCLCEIRYSGEGCAGPN 358
GC SG G C G C ++R + G A PN
Sbjct: 74 GCGFDGSGNGQCQTGDCGGKLRCTAYG-AAPN 104
>08_02_1204 -
25267546-25268219,25268319-25268452,25269567-25269661,
25270289-25270304,25270635-25270684,25270960-25271331
Length = 446
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 347 AGPNLPYHACIGGVFLVVAFVCAVQLM 427
AGPNLP C+ GV CA+ L+
Sbjct: 298 AGPNLPPGGCLAGVGAATDSSCALSLL 324
>05_04_0259 + 19494629-19495394,19495408-19495949
Length = 435
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = +2
Query: 251 AKGAGCALSCSGRGD--CMNGTC 313
AK A CA CSG C+N TC
Sbjct: 102 AKSAACATGCSGAASPGCLNDTC 124
>10_08_0985 -
22042801-22042963,22043019-22043138,22043261-22043562,
22044055-22044351,22044448-22044556,22044826-22045358,
22045446-22045644,22045741-22045865,22045937-22046020,
22046093-22046221,22046337-22046465,22046593-22046739,
22047106-22047346,22047859-22047980
Length = 899
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 635 ATIQTSTGDNKPIEDWSPIXLEK 567
A T+TG+ KPIED S I ++K
Sbjct: 865 AACGTATGEEKPIEDISDISIDK 887
>05_01_0587 +
5273650-5273740,5273861-5273924,5274001-5274302,
5274399-5274570,5274654-5274717,5274809-5274847
Length = 243
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 197 RNMRSLLAYYADAVMSVAAKGAGCALSCSGRGDCMNG 307
R R LLA D M+ AA A SC+G + + G
Sbjct: 145 RLFRGLLAAQRDPTMATAAAAAAAGESCTGEEEAIAG 181
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 496 PEDAVSGRFPRLPDTGSLLRFAV 564
PEDA G PR+PD G L F V
Sbjct: 62 PEDAGEGEQPRVPDLGEDLVFEV 84
>08_01_0469 -
4127950-4127988,4127989-4128264,4128845-4130861,
4131134-4131987
Length = 1061
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 203 CYDQRRRPPLFTTVAVIFIS*NSRCWNIHNFVSLNTI 93
C+D+ + P F + V+ I R WNI ++L +
Sbjct: 571 CFDKNMQLPSFQVLRVLEIQKQGRWWNIDGKINLQHV 607
>06_03_1373 +
29667871-29668782,29668872-29669851,29670156-29670350,
29670460-29670676
Length = 767
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 2/18 (11%)
Frame = -1
Query: 221 KPTTNACYDQRRR--PPL 174
KPT+N CY+ RRR PP+
Sbjct: 512 KPTSNECYETRRRQQPPM 529
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,389,744
Number of Sequences: 37544
Number of extensions: 295095
Number of successful extensions: 899
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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