Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30215
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42620.1 68418.m05188 expressed protein                             39   0.003
At3g57630.2 68416.m06421 exostosin family protein contains Pfam ...    33   0.12 
At3g57630.1 68416.m06420 exostosin family protein contains Pfam ...    33   0.12 
At5g24620.1 68418.m02908 thaumatin-like protein, putative simila...    33   0.16 
At2g43590.1 68415.m05417 chitinase, putative similar to basic en...    28   4.7  
At1g18250.1 68414.m02276 thaumatin, putative identical to SP|P50...    28   6.2  

>At5g42620.1 68418.m05188 expressed protein
          Length = 841

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 218 AYYADAVMSVAAKGAGCALSCSGRGDCMNGTCLCEIRYSGEGCAGPNLP 364
           AY+     SV +    C  SC+  GDC++G C C + Y G  C   + P
Sbjct: 587 AYHELCSTSVVSVLGQCPNSCNFNGDCVDGKCRCLLGYHGHDCRNRSCP 635



 Score = 31.1 bits (67), Expect = 0.66
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 254 KGAGCALSCSGRGDCMN-GTCLCEIRYSGEGCA 349
           +   C  +C+G G C   G C+CE  ++G  C+
Sbjct: 630 RNRSCPNNCNGHGKCTTQGVCICENGFTGIDCS 662


>At3g57630.2 68416.m06421 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 791

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 266 CALSCSGRGDCMNGTCLCEIRYSGEGCAGPN 358
           C   CSG G C  G C C+  + G  C+ P+
Sbjct: 275 CVNQCSGHGKCRGGFCQCDKGWFGTDCSIPS 305


>At3g57630.1 68416.m06420 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 793

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 266 CALSCSGRGDCMNGTCLCEIRYSGEGCAGPN 358
           C   CSG G C  G C C+  + G  C+ P+
Sbjct: 277 CVNQCSGHGKCRGGFCQCDKGWFGTDCSIPS 307



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 257 GAGCALSCSGRGDCMN--GTCLCEIRYSGEGCA 349
           G  C   CSG+G C +  G C C   ++GE C+
Sbjct: 118 GRKCMSDCSGQGVCNHEFGLCRCFHGFTGEDCS 150


>At5g24620.1 68418.m02908 thaumatin-like protein, putative similar
           to thaumatin-like protein [Arabidopsis thaliana]
           GI:2435406; contains Pfam profile PF00314: Thaumatin
           family
          Length = 420

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 263 GCALSCSGRGDCMNGTCLCEIRYSGEGCAGPNLPYHACIG 382
           GC    +G G CM G C  ++  +G G A P   +   +G
Sbjct: 80  GCNFDANGAGKCMTGDCGGKLECAGNGAAPPTSLFEITLG 119


>At2g43590.1 68415.m05417 chitinase, putative similar to basic
           endochitinase CHB4 precursor SP:Q06209 from [Brassica
           napus]
          Length = 264

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = +2

Query: 212 LLAYYADAVMSVAAKGAGCA--LSCSGRGDCMNGTCLCEIRYSGEGCAGPNLPYHACIGG 385
           LL ++++ V S   +  GCA  L CS  G C      C +      C G   P    +G 
Sbjct: 14  LLGFFSETVKS---QNCGCAPNLCCSQFGYCGTDDAYCGVGCRSGPCRGSGTPTGGSVGS 70

Query: 386 V 388
           +
Sbjct: 71  I 71


>At1g18250.1 68414.m02276 thaumatin, putative identical to SP|P50699
           Thaumatin-like protein precursor {Arabidopsis thaliana};
           strong similarity to pathogenesis-related group 5
           protein GI:2749943 from [Brassica rapa]
          Length = 243

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 263 GCALSCSGRGDCMNGTCLCEIRYSGEGCAGP 355
           GC    SGRG C  G C   +  +G G   P
Sbjct: 76  GCTFDRSGRGHCATGDCGGSLSCNGAGGEPP 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,153,068
Number of Sequences: 28952
Number of extensions: 224879
Number of successful extensions: 597
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)