Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30214
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.52 
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    29   0.68 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.68 
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    28   1.2  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   4.8  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    26   4.8  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    26   6.4  

>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 497 PTRSKTSALGTNPIALAAPAKNGDNLVVDLATTAV 601
           PT S TS +  +P+  AAP+ N + ++  L +  V
Sbjct: 354 PTTSSTSVISPDPLQTAAPSANVNEVIASLESKVV 388


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 23/71 (32%), Positives = 30/71 (42%)
 Frame = +2

Query: 452 GLIGLSFTNSSPILVPTRSKTSALGTNPIALAAPAKNGDNLVVDLATTAVAMGKVEIQVH 631
           GL+ +S    SPIL  T+    + G+N I+L     N  + VVD    A   G V   V 
Sbjct: 11  GLLTISLAQCSPILKDTKDTKFSTGSN-ISLKKRDTNVFDSVVDTINPASYFGTVSHPVT 69

Query: 632 KRGAVASWLGS 664
             G     L S
Sbjct: 70  PAGVSTDSLSS 80


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 180  PTVSAWIRRSACAFASDTGAPTAVRLSSMNLLASSTSTSGMTVL 49
            P  S+ +  S+    S TG  T+  ++S ++L SST  +  TVL
Sbjct: 923  PITSSSVLNSSTPITSSTGLNTSTPITSSSVLNSSTPITSSTVL 966



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 180  PTVSAWIRRSACAFASDTGAPTAVRLSSMNLLASSTSTSGMTVL 49
            P  S+ +  S+    S T   T+  ++S ++L SST  +  TVL
Sbjct: 1055 PITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVL 1098



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 180  PTVSAWIRRSACAFASDTGAPTAVRLSSMNLLASSTSTSGMTVL 49
            P  S+ +  S+    S T   T+  ++S ++L SST  +  TVL
Sbjct: 1595 PITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVL 1638



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 180  PTVSAWIRRSACAFASDTGAPTAVRLSSMNLLASSTSTSGMTVL 49
            P  S+ +  S+    S T   T+  ++S ++L SST  +  TVL
Sbjct: 1859 PITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVL 1902



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 180  PTVSAWIRRSACAFASDTGAPTAVRLSSMNLLASSTSTSGMTVL 49
            P  S+ +  S+    S T   T+  ++S ++L SST  +  TVL
Sbjct: 2051 PITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVL 2094



 Score = 26.2 bits (55), Expect = 4.8
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
 Frame = -2

Query: 372  ASCAFLIATSIQ-KFPTVAPKASQPSTRAVAADSFNITGFAQGSVAFDRISFI*NSNLLS 196
            +S A   +T++    P  +      ST   ++ + N +     S   +  + I +S++L+
Sbjct: 704  SSTAITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSSILN 763

Query: 195  P*L*CPTVSAWIRRSACAFASDTGAPTAVRLSSMNLLASSTSTSGMTVL 49
                 P  S+ +  S+    S T   T+  ++S ++L SST  +  TVL
Sbjct: 764  SST--PITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVL 810


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +2

Query: 77  EEARRFMEDSLTAVGAPVSEAKAQADLLIHADTVGHYSH 193
           E+ R  ++  ++  GAP  + +A+ D+L +AD +  + H
Sbjct: 735 EKERADLQILISPAGAPDFKRRAEVDMLTYADVLKEFKH 773


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 167 ADTVGHYSHG-LNRLEFYINDILSKATDPCAKPVILKESAATALV 298
           A ++GH ++   N+L  +   I S +T P   P+I+ +S +++++
Sbjct: 256 ASSLGHRTNNNQNQLIRFSTQIRSSSTSPPRSPLIISDSPSSSII 300


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 375 PASCAFLIATSIQKFPTVAPKASQPSTRAVAADSFNITGFA 253
           P+  A  ++T I+  P     +  PST    AD+ NIT +A
Sbjct: 341 PSVPAHTVSTDIRSSPFSGRPSDNPSTLISTADADNITLYA 381


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
 Frame = +1

Query: 220 KRYPVKSNRSLC--KAGDIE 273
           KR P+ SNRSLC  K GD++
Sbjct: 448 KRVPLLSNRSLCYQKVGDLK 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,514
Number of Sequences: 5004
Number of extensions: 58771
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)