Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30214
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0356 - 2814175-2815401                                           31   0.71 
09_01_0019 + 403078-404211                                             31   0.94 
02_01_0128 - 930461-930828,931223-931369,931567-931704,931888-93...    30   2.2  
12_02_0711 + 22404710-22404824,22405726-22406288,22406386-224065...    28   6.6  
01_06_0964 + 33446750-33447868                                         28   8.8  

>01_01_0356 - 2814175-2815401
          Length = 408

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
 Frame = +2

Query: 404 NHYGMAGYWALKAEKQGLIGLSFT-NSSPILVPTRSKTSALGTNPIALAAPAKNGDNLVV 580
           N Y  AG WA  AE   L+  S    S+P  V  R     L T+ +A A        L V
Sbjct: 189 NSYSAAGGWAAPAEFLDLLRFSLAGRSTPSAVVHRGAAHWLCTDDVASATRGDRLYKLSV 248

Query: 581 DLATTAVAMGKV---EIQVHKRGAVASWL 658
           ++   A A  +V    + V   GA A+ L
Sbjct: 249 EVGVPAAATPRVSMTNLPVRAGGATATLL 277


>09_01_0019 + 403078-404211
          Length = 377

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -2

Query: 384 HPTPASCAFLIATSIQKFPTVAPKASQPSTRAVAADSFNITGFAQGSVAFDRIS 223
           H  P+S     A +       AP AS PS+ + AA S N     QG +A  RI+
Sbjct: 44  HQPPSSSVSANAAAANAAAASAPSASAPSSSSAAASSDNAYTSFQGLLALARIT 97


>02_01_0128 -
           930461-930828,931223-931369,931567-931704,931888-931975,
           932068-932157,932249-932315,933411-933535,934079-934213
          Length = 385

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 41  HFLSTVMPEVLVEEARRFMEDSLTAVGAPVSEAKAQADL 157
           H L T++PE    +A R  +DS TA  AP S     +D+
Sbjct: 272 HALKTLLPEFFSSKASRIPDDSETAPQAPDSAPNDDSDV 310


>12_02_0711 +
           22404710-22404824,22405726-22406288,22406386-22406547,
           22406664-22407257
          Length = 477

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +1

Query: 307 RRFRCYCRKLLYGCRDKEGAGSGSRMGGCQT*QSLRYGWILGIESGK 447
           R  R  CR+L +GC D  GA + S +G   T  ++  G I GI  GK
Sbjct: 48  RLLRPRCRRLYHGCSD--GAAACSVVGERVTVLTIDGGGIRGIIPGK 92


>01_06_0964 + 33446750-33447868
          Length = 372

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 390 ATHPTPASCAFLIATSIQKFPTVAPKASQPSTRAVAADSFNITGFAQGSVA 238
           A+ P PASC  ++A ++   P   P       RA+ A S +    A  +VA
Sbjct: 54  ASSPDPASCQAIVADAVLASPHSHPSRPAHVLRAILATSLDRHDAAAEAVA 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,318,305
Number of Sequences: 37544
Number of extensions: 428836
Number of successful extensions: 1363
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)