Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30214
(733 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0) 213 1e-55
SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08) 31 1.3
SB_47668| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_44141| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_52642| Best HMM Match : DUF1621 (HMM E-Value=4.5) 28 9.0
SB_28653| Best HMM Match : rve (HMM E-Value=8.4e-10) 28 9.0
SB_23417| Best HMM Match : Phycoerythr_ab (HMM E-Value=0.49) 28 9.0
SB_43773| Best HMM Match : TPR_1 (HMM E-Value=0.26) 28 9.0
>SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)
Length = 883
Score = 213 bits (520), Expect = 1e-55
Identities = 97/189 (51%), Positives = 136/189 (71%)
Frame = +2
Query: 68 VLVEEARRFMEDSLTAVGAPVSEAKAQADLLIHADTVGHYSHGLNRLEFYINDILSKATD 247
V V + F+E +T VG + A+ +L D GH+SHGLNRLE Y++DI T
Sbjct: 34 VKVADVESFIERCMTKVGTTEAHARQLGQVLTAGDVRGHFSHGLNRLEMYVHDIQEGTTV 93
Query: 248 PCAKPVILKESAATALVDGCDALGATVGNFCMDVAIRKAQEAGVGWVAARRSNHYGMAGY 427
KP ++K++AATA VDG + LG VGNFCMD+AI KA++ GV WV + SNHYG+AG+
Sbjct: 94 YTGKPTVVKQTAATAFVDGNNLLGPVVGNFCMDLAINKAKDVGVSWVVCKGSNHYGIAGW 153
Query: 428 WALKAEKQGLIGLSFTNSSPILVPTRSKTSALGTNPIALAAPAKNGDNLVVDLATTAVAM 607
+ L+A ++GLIG+S TN+SP++VPTR + LGTNPI++AAPA+NGD+ V+D+AT+AVA+
Sbjct: 154 YTLRALEEGLIGISVTNTSPLVVPTRGRGVTLGTNPISVAAPAQNGDSFVLDMATSAVAL 213
Query: 608 GKVEIQVHK 634
GK+E+ K
Sbjct: 214 GKIEMNRRK 222
>SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08)
Length = 504
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 202 QIGILYKRYPVKSNRSLCKAGDIERVGCDRSGGRLRRFRCYC 327
+I ILY Y S RS+C I C RS R RC C
Sbjct: 279 RIKILYSNYGRTSGRSVCPHPSIRTTSC-RSAESQRLIRCAC 319
>SB_47668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 280 GCDRSGGRLRRFRCYCRKLLY--GCRD-KEGAGSGSRMGGCQT*QSLRYGWILGIESGKT 450
G ++ G L+ F+ R+L+Y CR K+G G G GG L G L ++ +T
Sbjct: 94 GFEQQGKTLKHFQTKRRELVYILFCRPRKQGGGLGEGRGGPVFHLQLGEGRALPDKTSRT 153
Query: 451 GSH 459
G H
Sbjct: 154 GVH 156
>SB_44141| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 28.3 bits (60), Expect = 6.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 565 AVFSRSGQSYGICTQCTCF 509
A+ RSG +YG+C+ C F
Sbjct: 9 AILFRSGNAYGVCSSCRTF 27
>SB_52642| Best HMM Match : DUF1621 (HMM E-Value=4.5)
Length = 177
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/99 (21%), Positives = 40/99 (40%)
Frame = +2
Query: 380 GWVAARRSNHYGMAGYWALKAEKQGLIGLSFTNSSPILVPTRSKTSALGTNPIALAAPAK 559
GW ++ +A YW + E G+ + I+ + KT + N PA
Sbjct: 64 GWPETKQEADPRVAEYWTYRDEISVYNGVLYKGERVIVPSSLRKTLGIDHNMATYQIPAP 123
Query: 560 NGDNLVVDLATTAVAMGKVEIQVHKRGAVASWLGSRPRR 676
G N D+++ K+ + +K +A+ L + +R
Sbjct: 124 EGMNCNGDVSSN----WKIFREAYKDYLIATGLDEKAKR 158
>SB_28653| Best HMM Match : rve (HMM E-Value=8.4e-10)
Length = 290
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 374 GVGWVAARRSNHYGMAGYWALKAE 445
G GW A R+S H + YW ++ E
Sbjct: 47 GGGWPAYRKSTHPSIRQYWGIRDE 70
>SB_23417| Best HMM Match : Phycoerythr_ab (HMM E-Value=0.49)
Length = 403
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/99 (21%), Positives = 40/99 (40%)
Frame = +2
Query: 380 GWVAARRSNHYGMAGYWALKAEKQGLIGLSFTNSSPILVPTRSKTSALGTNPIALAAPAK 559
GW ++ +A YW + E G+ + I+ + KT + N PA
Sbjct: 290 GWPETKQEADPRVAEYWTYRDEISVYNGVLYKGERVIVPSSLRKTLGIDHNMATYQIPAP 349
Query: 560 NGDNLVVDLATTAVAMGKVEIQVHKRGAVASWLGSRPRR 676
G N D+++ K+ + +K +A+ L + +R
Sbjct: 350 EGMNCNGDVSSN----WKIFREAYKDYLIATGLDEKAKR 384
>SB_43773| Best HMM Match : TPR_1 (HMM E-Value=0.26)
Length = 419
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Frame = +2
Query: 77 EEARRFMEDSLTAVGAPV---SEAKAQADLLIHADTVGH---YSHGLNRLEFYINDILSK 238
EEAR++ME+SL +G+ V + +H H LEF++ + +K
Sbjct: 182 EEARQWMEESLKRLGSSVRYRGSLQKPGYTRVHRVFGVHDPNNDFAARNLEFFLQEYQAK 241
Query: 239 ATDPCAKPVILKE 277
A KP I K+
Sbjct: 242 ANGSTKKPNIFKK 254
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,749,626
Number of Sequences: 59808
Number of extensions: 463169
Number of successful extensions: 1123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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