Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30214
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59400.1 68416.m06625 expressed protein                             33   0.20 
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ...    31   0.60 
At4g11540.1 68417.m01851 DC1 domain-containing protein contains ...    30   1.4  
At4g01930.1 68417.m00257 DC1 domain-containing protein contains ...    30   1.4  
At4g11550.1 68417.m01852 DC1 domain-containing protein contains ...    29   2.4  
At4g01740.1 68417.m00226 DC1 domain-containing protein similar t...    29   3.2  
At1g55540.1 68414.m06356 proline-rich family protein contains pr...    29   4.2  
At4g01925.1 68417.m00256 DC1 domain-containing protein low simil...    28   5.6  
At4g01910.1 68417.m00251 DC1 domain-containing protein contains ...    28   5.6  
At3g54810.2 68416.m06066 zinc finger (GATA type) family protein ...    28   7.3  
At3g54810.1 68416.m06065 zinc finger (GATA type) family protein ...    28   7.3  
At3g09760.1 68416.m01156 zinc finger (C3HC4-type RING finger) fa...    28   7.3  
At4g01920.1 68417.m00255 DC1 domain-containing protein similar t...    27   9.7  
At1g74360.1 68414.m08615 leucine-rich repeat transmembrane prote...    27   9.7  

>At3g59400.1 68416.m06625 expressed protein
          Length = 265

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 20/51 (39%), Positives = 24/51 (47%)
 Frame = -2

Query: 663 EPNQLATAPLLCTCISTLPIATAVVAKSTTKLSPFLAGAAKAMGFVPNALV 511
           +P   AT  L+C+  ST    TAV A STT  S   A  A     + N LV
Sbjct: 39  QPTSAATFSLICSASSTSSSTTAVSAVSTTNASATTAETATIFDVLENHLV 89


>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 989

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 119 GAPVSEAKAQADLLIHADTVGHYSHGLNRLEFYINDIL---SKATDPCAKPVILK 274
           G P      +  ++I  +T+ H+SH  + L  ++ND+L   +K    C  P+ L+
Sbjct: 689 GVPEEIEDIEPYVVIDDNTIQHFSHKEHYLRLHVNDVLCNDNKRCKACTHPIFLQ 743


>At4g11540.1 68417.m01851 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 525

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 119 GAPVSEAKAQADLLIHADTVGHYSHGLNRLEFYINDIL---SKATDPCAKPVILK 274
           G P      +  ++I  +T+ H+SH  + L F++N +L   +K    C  PV L+
Sbjct: 266 GVPEEIEDIEPYVVIDDNTIQHFSHKEHYLRFHVNGLLWEENKRCSACTHPVRLQ 320


>At4g01930.1 68417.m00257 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +2

Query: 119 GAPVSEAKAQADLLIHADTVGHYSHGLNRLEFYINDIL---SKATDPCAKPVILK 274
           G P      Q  ++I  +T+ H+SH  + L  ++N +L   +K    C  P+ L+
Sbjct: 352 GVPEETEDIQPYVVIDENTIQHFSHKEHYLRLHVNGVLCDDNKWCSACTHPICLQ 406


>At4g11550.1 68417.m01852 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 668

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +2

Query: 119 GAPVSEAKAQADLLIHADTVGHYSHGLNRLEFYINDIL---SKATDPCAKPVILKESAAT 289
           G P      +  ++I  +T+ H+SH  + L F+++ +L   +K  + C +P+ L+     
Sbjct: 354 GVPEEIEDVEPYVVIDENTIQHFSHKEHYLRFHVSALLWEENKRCNACTQPIGLQSFYGC 413

Query: 290 ALVD 301
            + D
Sbjct: 414 VVCD 417


>At4g01740.1 68417.m00226 DC1 domain-containing protein similar to
           T15B16.6 similar to A. thaliana CHP-rich hypothetical
           proteins encoded by T10M13, GenBank accession number
           AF001308
          Length = 652

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +2

Query: 119 GAPVSEAKAQADLLIHADTVGHYSHGLNRLEFYINDIL---SKATDPCAKPVILK 274
           G P      +  ++I  +T+ H+SH  + L  ++N +L   +K    C  P+ L+
Sbjct: 326 GVPEEIEDIEPYVVIDDNTIQHFSHKEHYLRLHVNSVLCDDNKRCSACTHPICLQ 380


>At1g55540.1 68414.m06356 proline-rich family protein contains
           proline rich extensin domain, INTERPRO:IPR002965
          Length = 915

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -2

Query: 609 PIATAVVAKSTTKLSPFLAGAAKAMGFVPNAL--VLDLVGTNIGEEFVNDSPMRPCFSAF 436
           P+A+ V+ ++  K   F    AKA  FV  A   V  L  T+ G +F +       FS  
Sbjct: 248 PVASTVLEQTEKKAGEFKFSEAKANAFVETAAGSVQRLSTTSSGSDFESSKGFGAQFSTM 307

Query: 435 NAQYPA 418
           ++  PA
Sbjct: 308 SSGAPA 313


>At4g01925.1 68417.m00256 DC1 domain-containing protein low
           similarity to UV-B light insensitive ULI3 [Arabidopsis
           thaliana] GI:17225050; contains Pfam profile PF03107:
           DC1 domain
          Length = 399

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +2

Query: 119 GAPVSEAKAQADLLIHADTVGHYSHGLNRLEFYINDIL---SKATDPCAKPVILK 274
           G P      +  ++I  +T+ H+SH  + L  + N +L   +K   PC  P+ L+
Sbjct: 285 GVPEEIEDIEPYVVIDDNTIQHFSHKEHYLRLHDNGLLCDDNKRCRPCTHPICLQ 339


>At4g01910.1 68417.m00251 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +2

Query: 119 GAPVSEAKAQADLLIHADTVGHYSHGLNRLEFYINDIL---SKATDPCAKPVILK 274
           G P      +  ++I  +T+ H+SH  + L  ++N +L    K    C  P+ L+
Sbjct: 353 GVPEETEDIKPFVVIDNNTIQHFSHKKHYLRLHVNGVLCDDKKRCRACTHPICLQ 407


>At3g54810.2 68416.m06066 zinc finger (GATA type) family protein
           GATA transcription factor 3, Arabidopsis thaliana,
           Y13650
          Length = 322

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 470 FTNSSPILVPTRSKTSALGTNPIALAAPAKNG 565
           F +SSP+ V   S +S+  TN  +L  P K+G
Sbjct: 115 FRSSSPVSVLESSSSSSQTTNTTSLVLPGKHG 146


>At3g54810.1 68416.m06065 zinc finger (GATA type) family protein
           GATA transcription factor 3, Arabidopsis thaliana,
           Y13650
          Length = 322

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 470 FTNSSPILVPTRSKTSALGTNPIALAAPAKNG 565
           F +SSP+ V   S +S+  TN  +L  P K+G
Sbjct: 115 FRSSSPVSVLESSSSSSQTTNTTSLVLPGKHG 146


>At3g09760.1 68416.m01156 zinc finger (C3HC4-type RING finger)
           family protein  ; contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 491

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 488 ILVPTRSKTSALGTNPIALAAPAKNGDNLVVDLATT 595
           IL P   KT +L   PIA + P        VDL T+
Sbjct: 166 ILTPRLKKTESLPVTPIAHSNPESTHGRFAVDLVTS 201


>At4g01920.1 68417.m00255 DC1 domain-containing protein similar to
           A. thaliana CHP-rich proteins
          Length = 658

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +2

Query: 119 GAPVSEAKAQADLLIHADTVGHYSHGLNRLEFYINDIL---SKATDPCAKPVILK 274
           G P      +  ++I  +T+ H+SH  + L   +N +L   +K    C  P+ L+
Sbjct: 356 GLPEETEDIEPYVVIDENTIQHFSHKEHYLRLNVNGVLCDDNKRCKACTHPICLQ 410


>At1g74360.1 68414.m08615 leucine-rich repeat transmembrane protein
            kinase, putative similar to brassinosteroid insensitive 1
            GB:AAC49810 (putative receptor protein kinase); contains
            Pfam profiles: PF00560 Leucine Rich Repeat (17 repeats),
            PF00069 Eukaryotic protein kinase domain
          Length = 1106

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 65   EVLVEEARRFMEDSLTAVGAPVS 133
            E LVE ARR M  ++TA G+P++
Sbjct: 1022 ECLVEWARRVMTGNMTAKGSPIT 1044


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,857,046
Number of Sequences: 28952
Number of extensions: 321630
Number of successful extensions: 911
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)