BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30213 (570 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 230 6e-61 At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 224 4e-59 At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 224 4e-59 At2g22340.1 68415.m02651 hypothetical protein 33 0.18 At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 32 0.23 At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 1.2 At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 28 3.8 At5g09560.1 68418.m01107 KH domain-containing protein various pr... 27 6.7 At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 27 6.7 At3g54570.1 68416.m06038 calmodulin-binding protein-related cont... 27 6.7 At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing ... 27 8.8 >At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical to laminin receptor-like protein GB:U01955 [Arabidopsis thaliana]; identical to cDNA laminin receptor homologue GI:16379 Length = 298 Score = 230 bits (562), Expect = 6e-61 Identities = 105/167 (62%), Positives = 126/167 (75%) Frame = +3 Query: 69 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 248 L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71 Query: 249 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 428 IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131 Query: 429 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLM 569 DHQPI E + NIP+IA C+TDSP+RFVDI IP N K HSIG + Sbjct: 132 RTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCL 178 >At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical to p40 protein homolog GB:AAB67866 [Arabidopsis thaliana]; similar to 40S ribosomal protein SA (P40) GB:O65751 [Cicer arietinum] Length = 280 Score = 224 bits (547), Expect = 4e-59 Identities = 101/163 (61%), Positives = 123/163 (75%) Frame = +3 Query: 81 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 260 E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76 Query: 261 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 440 D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP DH Sbjct: 77 KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136 Query: 441 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLM 569 QPI E + NIP IA C+TDSP+ FVDI IP N K HSIG + Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCL 179 >At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical to p40 protein homolog GB:AAB67866 [Arabidopsis thaliana]; similar to 40S ribosomal protein SA (P40) GB:O65751 [Cicer arietinum] Length = 332 Score = 224 bits (547), Expect = 4e-59 Identities = 101/163 (61%), Positives = 123/163 (75%) Frame = +3 Query: 81 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 260 E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76 Query: 261 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 440 D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP DH Sbjct: 77 KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136 Query: 441 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLM 569 QPI E + NIP IA C+TDSP+ FVDI IP N K HSIG + Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCL 179 >At2g22340.1 68415.m02651 hypothetical protein Length = 358 Score = 32.7 bits (71), Expect = 0.18 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = +2 Query: 119 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 238 SW LP+GD +Q C WY + S +G+ + C Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227 >At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2) identical to SP|Q9GCB9 Mitochondrial ribosomal protein S2 {Arabidopsis thaliana}; contains Pfam profile PF00318: ribosomal protein S2 Length = 219 Score = 32.3 bits (70), Expect = 0.23 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +3 Query: 402 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 551 P ++V D + I EAS + IPV+A+ + + PL F + I P + S Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181 >At2g07020.1 68415.m00803 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 700 Score = 29.9 bits (64), Expect = 1.2 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +3 Query: 357 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 458 TP TNQ++ A E +LDP PI EA Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653 >At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726 from [Arabidopsis thaliana] Length = 78 Score = 28.3 bits (60), Expect = 3.8 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +2 Query: 185 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 307 P Q Y GK + + + R V HL+ ALR CC Sbjct: 38 PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78 >At5g09560.1 68418.m01107 KH domain-containing protein various predicted RNA binding proteins, Arabidopsis thaliana Length = 563 Score = 27.5 bits (58), Expect = 6.7 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Frame = +3 Query: 399 EPRLLIVLDPAQDHQPITEASYVNIPVI---ALCNTDSPLRFVDIAIPCNTKSS 551 +PR+ + P+ DH+ IT AS N PV L + +R VD+ I C+ +S+ Sbjct: 271 QPRIDYLPHPSYDHRLITSAS-KNPPVTIKQPLQASKDDIRQVDLKILCSNESA 323 >At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein contains PF01422: NF-X1 type zinc finger Length = 912 Score = 27.5 bits (58), Expect = 6.7 Identities = 23/78 (29%), Positives = 27/78 (34%) Frame = +2 Query: 89 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 268 CH C P G++ P G Q CD +A G TC C HR P C Sbjct: 312 CHAGECGLCPYQGKRS-CPCGKRFYQGLS----CDVVAPLCGGTCDKVLGCGYHRCPERC 366 Query: 269 VRHLITALRSACCTEVCR 322 R T+ CR Sbjct: 367 HRGPCLETCRIVVTKSCR 384 >At3g54570.1 68416.m06038 calmodulin-binding protein-related contains similarity to potato calmodulin-binding protein PCBP GI:17933110 from [Solanum tuberosum] Length = 417 Score = 27.5 bits (58), Expect = 6.7 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = -2 Query: 557 RVGRLGVAWDSNVHKS 510 R GR+G WD+NVH++ Sbjct: 107 RSGRIGRCWDANVHRA 122 >At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing protein low similarity to cysteine-rich polycomb-like protein (cpp1) [Glycine max] GI:4218187; contains Pfam profile PF03638: Tesmin/TSO1-like CXC domain Length = 360 Score = 27.1 bits (57), Expect = 8.8 Identities = 14/40 (35%), Positives = 16/40 (40%) Frame = +2 Query: 149 GDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 268 G C Q+ C CD AS G C+ C C H C Sbjct: 68 GCRCKQSKCLKLYCDCFAS--GVVCTDCDCVDCHNNSEKC 105 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,872,473 Number of Sequences: 28952 Number of extensions: 314584 Number of successful extensions: 657 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 650 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 657 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1102220672 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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