Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30212
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           27   2.5  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    26   4.4  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   4.4  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   5.8  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    25   7.6  

>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/69 (20%), Positives = 30/69 (43%)
 Frame = +1

Query: 64  CETKFNRMSVITKIVPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQPLDRKPEYSTAK 243
           C +   R+ +  +I+  + + H G      +S ++++        +S   D   EY    
Sbjct: 584 CSSPDERIRIPQRIIRHILNRHLGNNVGDRVSFRNEKFRVYVHSKISPNTDTYNEYVPVM 643

Query: 244 EAFEKCLKS 270
           EA+ + +KS
Sbjct: 644 EAYNEAVKS 652


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 76  FNRMSVITKI-VPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQPL 213
           FN + +I+ + V   S+   G+      ++K   S+F YT  L +PL
Sbjct: 357 FNAVIIISVVSVTNSSTYTAGRTLHGMANLKQAPSFFKYTDRLGRPL 403


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 124 LHFGKLSSAFLSVKSDRSYFTYTQSLSQPLDRKP 225
           LH GKLS  ++    D  Y  +  S   PL  +P
Sbjct: 683 LHLGKLSENYIHYYVDSMYALFIYSTDIPLKAEP 716


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 80  LNLVSHKAKGCRYYYFI 30
           LNL S+K  GCR +Y I
Sbjct: 384 LNLASNKITGCRTFYHI 400


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 76  FNRMSVITKI-VPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQPL 213
           FN + +I+ I V   S+   G+      ++K   ++F YT  L +PL
Sbjct: 357 FNAVIIISVISVTNSSTYTAGRTLHGMANLKQAPAFFKYTDRLGRPL 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,091
Number of Sequences: 5004
Number of extensions: 39024
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)