Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30212
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34228| Best HMM Match : RasGAP (HMM E-Value=0.0092)                 30   1.5  
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_40017| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_21039| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_34228| Best HMM Match : RasGAP (HMM E-Value=0.0092)
          Length = 633

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 164 NRIEVTLRIHNRCRSPWTGSLNIRPQRRRLRNVLNPVSFAKNI 292
           N  +++  +  +C SPW G LN R     L   L+ ++F K I
Sbjct: 300 NLQQISSLLCKKCASPWQGQLNQRYSSEDLFGSLDTIAFMKMI 342


>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
 Frame = -1

Query: 284 WQNLPDLRHFSNASFAVEYSGF----LSRGC---DNDCVY 186
           WQ   +L    N  FA + SGF    L+R C   D DCVY
Sbjct: 157 WQATEELASLLNVCFAKQLSGFDKRQLTRSCPRPDVDCVY 196


>SB_40017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 512

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 221 SLNIRPQRRRLRNVLNPVSFA-KNILLKNN*VPFDTYLV*FIHN 349
           ++N+  QR+RLRN LN    A +NI +  +  P D  ++ FIH+
Sbjct: 142 AINMIIQRKRLRNRLNEECGAYENISVVKDLAPPDLEMLRFIHD 185


>SB_21039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 214 DRKPEYSTAKEAFEKCLKSGKFCQKHFIK 300
           DR+ + +  KE    C +S   C KHF K
Sbjct: 33  DRRTDSTGCKENLVTCSESDAVCSKHFFK 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,894,198
Number of Sequences: 59808
Number of extensions: 266031
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)