Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30212
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32970.1 68417.m04690 expressed protein low similarity to SP|...    31   0.70 
At3g46930.1 68416.m05093 protein kinase family protein contains ...    28   4.9  

>At4g32970.1 68417.m04690 expressed protein low similarity to
           SP|Q13061 Triadin {Homo sapiens}
          Length = 750

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 61  LCETKFNRMSVITKIVPQ-VSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQPLDRKPEYST 237
           L ++ F RMS +    PQ  + +   K  +   +V  D+S    T+   QPL++KP+ +T
Sbjct: 205 LSQSVFRRMSTLLSHPPQRCAQVDLPKPPAKKPAVSCDKSASDSTKGAKQPLEKKPKTNT 264

Query: 238 AK 243
            +
Sbjct: 265 KR 266


>At3g46930.1 68416.m05093 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 475

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +1

Query: 52  PFALCETKFNRMSVITKIVPQVSSLHFGKLSSAFLSVKSDRSYFT--YTQSLSQPLDRKP 225
           PF + + K  R  V  K    VS L    LS AF+  KSD   F+  + + +      K 
Sbjct: 31  PFTVNQEKMQRNPVTNK-KRSVSPLPHMALSDAFIEAKSDIKRFSTPHPRRVEPEKGMKA 89

Query: 226 EYSTAKEAFEK 258
           + S+ K++ EK
Sbjct: 90  KSSSRKDSSEK 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,455,429
Number of Sequences: 28952
Number of extensions: 186234
Number of successful extensions: 385
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)