Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30211
         (784 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2EER3 Cluster: Putative uncharacterized protein; n=1; ...    35   2.6  
UniRef50_Q8IBY8 Cluster: Putative uncharacterized protein PF07_0...    34   4.6  
UniRef50_UPI00006CD129 Cluster: TPR Domain containing protein; n...    33   6.1  
UniRef50_Q03DM1 Cluster: ABC-type multidrug transport system, pe...    33   6.1  
UniRef50_A0GWH4 Cluster: Lipopolysaccharide biosynthesis; n=2; C...    33   8.1  
UniRef50_Q8M9T2 Cluster: Putative membrane protein ycf1; n=1; Ch...    33   8.1  

>UniRef50_A2EER3 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 663

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = -1

Query: 604 YVINTKNIQFVKKILLSYIFSLSID*NFCYKI*N-GLITLFDCTF--CTNSQLYLKEFL* 434
           + + + NI+FV  +L +Y F   +D   CY   N     LF  TF  C++  LY+ EF+ 
Sbjct: 238 FAVASHNIEFVTYLLNNYTF--DVDLRICYNYNNLQSFLLFIDTFKLCSSGLLYISEFMG 295

Query: 433 SNFL 422
           +N L
Sbjct: 296 NNIL 299


>UniRef50_Q8IBY8 Cluster: Putative uncharacterized protein PF07_0042;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein PF07_0042 - Plasmodium falciparum
            (isolate 3D7)
          Length = 2910

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 16/60 (26%), Positives = 33/60 (55%)
 Frame = +2

Query: 308  VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIE 487
            +N+ +D ++  NE LN+ +  EK+ N   +  L  + E+   +   LE + G++ K T++
Sbjct: 2006 LNILLDQNKKINEELNIQVEQEKLINNEIIVQLKKENEENNKINSLLEEQNGLNKKVTLQ 2065


>UniRef50_UPI00006CD129 Cluster: TPR Domain containing protein; n=2;
           Tetrahymena thermophila SB210|Rep: TPR Domain containing
           protein - Tetrahymena thermophila SB210
          Length = 878

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 15/40 (37%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = -1

Query: 460 QLYLKEFL*SNFLFYVSIQIS*TVAI-VDFFNKNIDIQEF 344
           +L +K++    F+F  S+QI  T+ I +DFF++NI++ +F
Sbjct: 674 KLSIKQYFIDEFIFNSSVQIELTLLIQMDFFSQNINLSQF 713


>UniRef50_Q03DM1 Cluster: ABC-type multidrug transport system,
           permease component; n=16; Bacilli|Rep: ABC-type
           multidrug transport system, permease component -
           Pediococcus pentosaceus (strain ATCC 25745 / 183-1w)
          Length = 380

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
 Frame = +2

Query: 359 DILVEKIYNGYGLTDLNTDIEK----KIALQKFLEVELGISAKSTIEERNQAILDFVTKI 526
           D ++EK  N + +T  NTD  K    K+A +  + V      K  +E+ N+A+ +  TK+
Sbjct: 89  DTIIEKDGNNFNITYANTDATKTATTKMAFKNAVTVNNIKQLKKHLEQSNRALNELQTKL 148

Query: 527 SVNTQTKDVAQKNL 568
           ++ T+ K V  K++
Sbjct: 149 ALVTK-KSVKTKSM 161


>UniRef50_A0GWH4 Cluster: Lipopolysaccharide biosynthesis; n=2;
           Chloroflexus|Rep: Lipopolysaccharide biosynthesis -
           Chloroflexus aggregans DSM 9485
          Length = 349

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 14/39 (35%), Positives = 27/39 (69%)
 Frame = +2

Query: 404 LNTDIEKKIALQKFLEVELGISAKSTIEERNQAILDFVT 520
           LNTD ++ +A QKF E +L    ++ +++  QA++DF++
Sbjct: 159 LNTDFQESVAAQKFFE-DLIAPYQADVDQARQALIDFLS 196


>UniRef50_Q8M9T2 Cluster: Putative membrane protein ycf1; n=1;
            Chaetosphaeridium globosum|Rep: Putative membrane protein
            ycf1 - Chaetosphaeridium globosum
          Length = 1450

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
 Frame = +2

Query: 353  NVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEERNQAI------LDF 514
            N  IL EK++N   + + N  IEK I  +K  ++   I  K  +   N++I      LDF
Sbjct: 877  NTIILFEKVFNKKRINEDNKTIEKSILNKKNEQL---ILKKDEVIPNNKSIAGKLSKLDF 933

Query: 515  ----VTKISVNTQTKDVAQKNLFDKLNILGVNYXXXXXXXXXXXXGSDELNKITNPLINT 682
                +TK S+   TK +  KN ++ L  L  N               + LNK+   LI  
Sbjct: 934  HNQNITKTSIKNATKQILIKNEYNSL--LKENKNLFTKNKIVFLKIKNILNKLNLKLIKV 991

Query: 683  -VDQTVKEKTYL 715
             ++ T K KT L
Sbjct: 992  KINFTYKIKTVL 1003


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 465,075,121
Number of Sequences: 1657284
Number of extensions: 8233271
Number of successful extensions: 21672
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21586
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)