Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30209
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    83   4e-17
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    27   1.8  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.1  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    26   5.5  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    26   5.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   7.2  
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    25   9.5  

>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 82.6 bits (195), Expect = 4e-17
 Identities = 42/116 (36%), Positives = 66/116 (56%)
 Frame = +2

Query: 242 GQATCHTHPHLIQQGHLTCGITQKEYAERRETLISRLVSEAPNVHKTHIVVIPAARKQFM 421
           GQAT  THPH++Q G LT  I+ +EY  RR+ + S L            +++ +A  + M
Sbjct: 42  GQATDSTHPHILQPGELTPRISAQEYKTRRDRVASLL-------EDNDFMIVTSAPVRHM 94

Query: 422 SDKIPYVFRQNSDFFYLTGCLEPSAILVMIKPAHSDTFKSVLFVHEKDSHAELWGG 589
                Y + Q+ +F+YLTGCLEP+A+L+M K   S ++   L++  K+ + E W G
Sbjct: 95  CGAAFYEYHQDPNFYYLTGCLEPNAVLLMFKNGASGSYDCSLYLPSKNPYIEKWEG 150


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 119 AVKHHKLLKSHIRNQLRCLSTIDHPPGAVERSTFSIPQGTFGQAT 253
           AVKH+    SH   +   L T+   P   E+STF  P  +  QA+
Sbjct: 557 AVKHNLGNSSHSIMRHHTLGTLRSRPSFSEKSTFPAPLTSISQAS 601


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 194 PGAVERSTFSIPQGTFGQATCHTHPHLIQQGHLTCGITQKE 316
           PG   R  F+IP       +C  +PHL+ +  +   I  +E
Sbjct: 306 PGLHSRVEFTIPVNDLIHGSCTENPHLLVRHSIYVSIHSRE 346


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 232  LWYRECRSLYRSRGVVNCRKASKLISY 152
            +WYRECRS Y    V++ +   + I Y
Sbjct: 1003 VWYRECRSHYFISPVLSNQVIDEKIQY 1029


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/74 (27%), Positives = 31/74 (41%)
 Frame = +2

Query: 68  IKRTKTMQRLRKVLPSLAVKHHKLLKSHIRNQLRCLSTIDHPPGAVERSTFSIPQGTFGQ 247
           +K   +  R    LP+L  +   L+    R  L  L+T+ +PP    R   S+   TF  
Sbjct: 211 LKEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTTVGNPP--FRRLCGSLGADTFYS 268

Query: 248 ATCHTHPHLIQQGH 289
                +P  + QGH
Sbjct: 269 EMAMCYP--LMQGH 280


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 122 VKHHKLLKSHIRNQLRCLSTIDHPPGAVERSTFSIPQGT-FGQAT 253
           V + KLLKSH+ N+L     + HP     RS     + T F Q+T
Sbjct: 468 VSYQKLLKSHVMNKLH----MAHPKSHTNRSLLRQLKNTKFFQST 508


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 437 YVFRQNSDFF-YLTGCLEPSAILVMIKPAHSDTFKSV 544
           Y+ +   +++ +LTGC  P A  ++++    D    V
Sbjct: 349 YIDKLGDEYYTFLTGCKNPKACTILLRGPSKDIINEV 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,525
Number of Sequences: 5004
Number of extensions: 56406
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)