Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30209
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405...    77   1e-14
11_01_0441 - 3363069-3363137,3363273-3363430,3363549-3363613,336...    33   0.20 
01_06_0706 + 31352513-31352813,31352906-31353363                       33   0.20 
07_03_1393 - 26245105-26246862                                         28   7.5  
03_04_0075 + 17066321-17066381,17066476-17067534,17067641-17067927     27   9.9  

>12_02_0786 +
           23139854-23139901,23140054-23140122,23140531-23140544,
           23140603-23140675,23140875-23140979,23141817-23142080,
           23142159-23142251,23142381-23142587,23143155-23143258,
           23143436-23143502,23143576-23143683,23143943-23144033,
           23144123-23144193,23144421-23144549,23144659-23144766
          Length = 516

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 35/89 (39%), Positives = 54/89 (60%)
 Frame = +2

Query: 242 GQATCHTHPHLIQQGHLTCGITQKEYAERRETLISRLVSEAPNVHKTHIVVIPAARKQFM 421
           GQ T  +HP L+ +G +T GIT  EY  RR+ L+  L  ++       + +I +A +Q M
Sbjct: 94  GQPTPRSHPELLAEGEITPGITSDEYIFRRKKLLEVLPEKS-------LAIIASAEQQMM 146

Query: 422 SDKIPYVFRQNSDFFYLTGCLEPSAILVM 508
           +D +PY FRQN D+ Y+TGC +P  + V+
Sbjct: 147 TDVVPYSFRQNGDYLYITGCAQPGGVAVL 175


>11_01_0441 -
           3363069-3363137,3363273-3363430,3363549-3363613,
           3363709-3363777,3363881-3363973,3364081-3364184,
           3364327-3364410,3364486-3364693,3364809-3364880,
           3365005-3365080,3365788-3365900,3366006-3366153,
           3366996-3367073,3367968-3368097,3368296-3368486,
           3368644-3368704,3368847-3368956,3369090-3369312
          Length = 683

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 376 VHIWSFTHKSAN*SFSPLCIFFLC-DPASKMPLLDQVRMGVTGCLAEGALWYRECRSLYR 200
           +H+W F+       F+   IFF+C  P   +PLL       T  LA  A W+ +C    R
Sbjct: 425 LHVWMFSETE----FAEDLIFFVCLQPELNLPLLKAASSMPTIRLARYAKWFNDCSEDIR 480

Query: 199 S 197
           S
Sbjct: 481 S 481


>01_06_0706 + 31352513-31352813,31352906-31353363
          Length = 252

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +2

Query: 98  RKVLPSLAVKHHKLLKSHIRNQLRCLSTIDHPPGAVERSTFSIPQGTFGQATC 256
           RK+  SL  +  +L  SH       L    H PG +E++      GTFG+  C
Sbjct: 108 RKIFDSLPAEEQRLWHSHAHEIKAGLWVSPHVPGMLEKAELEKMAGTFGKFWC 160


>07_03_1393 - 26245105-26246862
          Length = 585

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 527 DTFKSVLFVHEKDSHAELWGGSSNW 601
           D  +S   VH  D + ELW  +S W
Sbjct: 507 DKLRSYFHVHLLDDYKELWSNTSEW 531


>03_04_0075 + 17066321-17066381,17066476-17067534,17067641-17067927
          Length = 468

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -2

Query: 408 RAAGITTICVLCTFGASLTSLLIK--VSLLSAYSFCVIPQVRCPC 280
           R   + T  V CT+   L S      VS  S Y+  ++P  RC C
Sbjct: 195 RTQALMTWTVTCTYSQQLASRYPTCCVSFSSFYNSTIVPCARCAC 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,831,855
Number of Sequences: 37544
Number of extensions: 365671
Number of successful extensions: 868
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)