Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30209
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   3e-15
SB_19954| Best HMM Match : AMP_N (HMM E-Value=1.6e-32)                 30   1.4  
SB_43726| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-31)               28   7.6  
SB_25267| Best HMM Match : AbfB (HMM E-Value=6.6)                      28   7.6  
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 38/74 (51%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
 Frame = +2

Query: 290 LTCGITQKEYAERRETLISRLVS-EAPNVHKTHIVVIPAARKQFMSDKIPYVFRQNSDFF 466
           +T GIT+KEY +RR  L+S L +     +H  H+V+IP    QFMS  IPY FRQN+DF 
Sbjct: 96  VTPGITKKEYKDRRHKLMSLLYNTHFGELHDKHLVIIPGNPNQFMSTDIPYPFRQNTDFL 155

Query: 467 YLTGCLEPSAILVM 508
           YLTG  EP A+L++
Sbjct: 156 YLTGFQEPDAVLLL 169


>SB_19954| Best HMM Match : AMP_N (HMM E-Value=1.6e-32)
          Length = 198

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = +2

Query: 317 YAERRETLISRLVSEAPNVHKTHIVVIPAARK--QFMSDKIPYVFRQNSDFFYLTGCLEP 490
           +A  R  L  RL  +   V K  IVV+    +  ++ +D    VFRQ S F +  G LE 
Sbjct: 2   FATNRRRLCERL-KKNEKVPKGAIVVLLGGEQNTRYCTDT-DVVFRQESFFHWTFGVLEA 59

Query: 491 SAILVMIKPAHSDTFKSVLFVHEKDSHAELWGG 589
                +      DT KS+LF+ +      +W G
Sbjct: 60  DCFGAV----EVDTGKSILFIPKLPQEYAIWMG 88


>SB_43726| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-31)
          Length = 516

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 565 QSCRTVGRVLELAARLPHSCLLWTKLDQ 648
           Q+CR +GR +EL      SCLL T + +
Sbjct: 22  QTCRAIGRKVELIVLASVSCLLRTTISR 49


>SB_25267| Best HMM Match : AbfB (HMM E-Value=6.6)
          Length = 235

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 59  TKAIKRTK-TMQRLRKVLPSLAVKHHKLLKSHIRNQLRCLSTIDHPPGAVERSTFSIPQG 235
           T  I+R   T+Q+   VLPS    +HK    H    ++  S   H P +V  S ++    
Sbjct: 81  TTTIQRPSVTLQQRNSVLPS-RYNNHKASVCHATTTIQRPSVTLHQPYSVLPSRYNNHTA 139

Query: 236 TFGQAT 253
           +F QAT
Sbjct: 140 SFRQAT 145


>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2021

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 263  HPHLIQQGHLTCGITQKEYAERRETLISRLVSEA 364
            HP  ++Q H T  IT KEY      +I  ++S A
Sbjct: 1837 HPPYVRQDHPTTNITSKEYISPIYGIIPPVISAA 1870


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,879,622
Number of Sequences: 59808
Number of extensions: 438314
Number of successful extensions: 1039
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)