Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30209
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-lik...    29   3.8  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z66494-7|CAA91261.1|  445|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symme...    27   8.8  
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical
           protein F01G4.1 protein.
          Length = 1474

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 193 PWSGREIYILYTTRHLRPSNLSHPSALDPTGASYLRDH 306
           P+   +I+ L+  R  RP+ +S PS +DP G    R++
Sbjct: 147 PYDLMKIFNLHQIRCNRPTTISVPSGIDPVGMLKQREN 184


>Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical
           protein F01G4.1 protein.
          Length = 1474

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 193 PWSGREIYILYTTRHLRPSNLSHPSALDPTGASYLRDH 306
           P+   +I+ L+  R  RP+ +S PS +DP G    R++
Sbjct: 147 PYDLMKIFNLHQIRCNRPTTISVPSGIDPVGMLKQREN 184


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
            K03H1.5 protein.
          Length = 1385

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
 Frame = +2

Query: 248  ATCHTHPH----LIQQGHLTCGIT----QKEYAERRETLISRLVSEAPNVHKTHIVVIPA 403
            +TC  +P      I  G    G+T    QKE+   ++T   +L+S  P + K  +V  P 
Sbjct: 1136 STCQNNPECEYDFIMTGRKEVGLTTLRRQKEFFALQKTGSKQLISCGPLLKKEGVVKTPP 1195

Query: 404  ARKQFMSDKIPYVFRQNSDFFYLTGCLE 487
            A      DK+ +  +     +Y+ G +E
Sbjct: 1196 AANYLDGDKVVFSCKPK---YYIHGDIE 1220


>AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-like
           protein protein.
          Length = 1474

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 193 PWSGREIYILYTTRHLRPSNLSHPSALDPTGASYLRDH 306
           P+   +I+ L+  R  RP+ +S PS +DP G    R++
Sbjct: 147 PYDLMKIFNLHQIRCNRPTTISVPSGIDPVGMLKQREN 184


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
 Frame = +2

Query: 131  HKLLKSHIRNQLRCLSTIDHPPGAVERSTFSIPQGTFGQATCHTHPHLIQQGHLTCGITQ 310
            H+++K  +      +ST+    GA++R   +IP           H H + +   T    Q
Sbjct: 3330 HEIVKGRVEKIGGLISTVQVLIGAIKRRLVAIPANADEFIRTKEHLHPLSKLSQTDETAQ 3389

Query: 311  K--EYAERRETLISRLVSEAPNVHKTHIVV 394
            K  ++AE+  TLI  +      +  T  VV
Sbjct: 3390 KLTKWAEKLSTLIGNMKRSNDQLSTTFSVV 3419


>Z66494-7|CAA91261.1|  445|Caenorhabditis elegans Hypothetical
           protein C34C6.7 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 196 WSGREIYILYTTRHLRPSNLSHPSALDPT 282
           W  R +Y+   TRH R  +   P AL PT
Sbjct: 379 WHDRSVYLPRITRHRRQDSDYLPGALSPT 407


>U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symmetry
            protein 1 protein.
          Length = 1425

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 47   IFINTKAIKRTKTMQRLRKVLPSLAVKHHKLLKSHIRNQLRCLSTIDH--PPGAVERS 214
            I+ N  +I RT++    +K    + + H K  K   +NQ   L +  H    G VERS
Sbjct: 925  IYHNHHSISRTRSGSINKKPATKIELNHDKEKKEKSKNQREMLRSTSHIGGMGVVERS 982


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 346 QTCE*SSKCAQNTYCSNPSC 405
           Q C+ SS+C  N+ C+N  C
Sbjct: 198 QNCQISSQCIDNSVCNNQMC 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,394,279
Number of Sequences: 27780
Number of extensions: 326843
Number of successful extensions: 768
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)