Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30208
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   3.6  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   6.3  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   6.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.3  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/31 (25%), Positives = 13/31 (41%)
 Frame = -1

Query: 301 SFCQVSFSFSTITCRLCFSTSASWAVSLFMV 209
           SFC++   +     + CF    SW    + V
Sbjct: 143 SFCEIDVEYFPFDEQTCFMKFGSWTYDGYTV 173


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 246 EKQRRQVIVENEKLTWQKESLEHIVDATSKERDDLKEKLKRVELQMLSRETEHALE-TEK 422
           EK RR   + NEK    +E       + S+ER+    K +R   +   R  E + + TE+
Sbjct: 14  EKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNERKYRKYRERSKERSRDRTER 73


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 246 EKQRRQVIVENEKLTWQKESLEHIVDATSKERDDLKEKLKR 368
           +K R+   + NEK  + +E   H   + S+ER+    K +R
Sbjct: 247 KKDRQYEKLHNEKEKFLEERTSHKRYSRSREREQKSYKNER 287


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 246 EKQRRQVIVENEKLTWQKESLEHIVDATSKERDDLKEKLKRVELQMLSRETEHALE-TEK 422
           EK RR   + NEK    +E       + S+ER+    K +R   +   R  E + + TE+
Sbjct: 247 EKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRERSKERSRDRTER 306


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,332
Number of Sequences: 438
Number of extensions: 2284
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)