Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30207
         (518 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    38   5e-05
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   0.53 
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    23   1.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   2.1  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    22   2.8  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   5.0  

>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 37.9 bits (84), Expect = 5e-05
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +2

Query: 14  CVEKTSFLLGGWRGEFRNVTCKTQPWTTV-YDTKKSCHLNSKLYRIGYEIQK--AFYSLY 184
           C   T F  G    +FR + C   P     Y  K +C +  ++  +GY+++    F   +
Sbjct: 42  CESNTDFSFGSKTIDFRKIQCSNSPLRKARYTEKGTCKMGREI-EVGYDLKSPDRFVRQF 100

Query: 185 EACFDLSEMKTHYVTHVLTPF 247
             CFD  ++ + Y ++ +T F
Sbjct: 101 TICFDDVDLNSLYSSYEITRF 121


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.6 bits (51), Expect = 0.53
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = +2

Query: 56  EFRNVTCKTQPWTTVYDTKKSCHLNSKLYRIGYEIQKAFYSLYEACFDLSEMKTH 220
           E + +TC   P+ T Y      HL +      ++  K  Y+        S MK+H
Sbjct: 227 EDKRLTCPKCPFITEYKHHLEYHLRNHAGSKPFQCNKCDYTCVNKSMLNSHMKSH 281



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 81  VLHVTFLNSPLQPPNRNDVFS 19
           V H  + ++PL PPN   + S
Sbjct: 96  VPHFAYNHNPLTPPNSEPLVS 116


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 356 RILGTNSTELYNKRQALTRGHLAPRADFPLRAQMRATFQY 475
           R  G+N ++  N     T GHL   +  PLR+  R+  +Y
Sbjct: 13  RTNGSNFSKFINCHY--TSGHLLGSSSLPLRSFYRSRIRY 50


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 250 RKRRQYVCDIM 218
           RKRRQY+C ++
Sbjct: 722 RKRRQYLCPVL 732


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 318 NCILNGIKWKLWRGSSERTALSCITNDRL*LVVTWPLAQTSLF 446
           +CILN  KW+L   + ++      T D    V   P+ Q  L+
Sbjct: 96  SCILNQDKWRLLNNNFQQIDKIFKTRDDRVKVYQAPVLQLFLY 138


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +3

Query: 48  GGVSLETSRAKLSRGPRCTTRKRVAI*TVSCTGSD 152
           GG +L  S     R   CT   RV   +V   G D
Sbjct: 127 GGANLTNSLTGPVRPAACTPDSRVGYGSVGLVGGD 161


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,037
Number of Sequences: 336
Number of extensions: 2654
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12468463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)