Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30207
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    32   0.059
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   1.7  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   9.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.0  

>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 31.9 bits (69), Expect = 0.059
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +2

Query: 224 VTHVLTPFTTLQSYXRTQFLDGGVFDNVPISKLYLKRNQMEIMERILGTNSTELYNKRQ 400
           +T V+ PF+T  +  + +FL G +  ++P   L +    +E  +R     +  +Y K++
Sbjct: 295 ITEVMEPFSTACTILQKEFLPGNLCKDLPTKLLNMFETVIEAYDRQASRYNVHIYQKKK 353


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 95   TVYDTKKSCHLNSKLYRIGYEIQKAFYSLYEACF 196
            TV D  ++C L  +++ I YE +   +SL   CF
Sbjct: 1795 TVEDRVRTCELFKEVFDIDYEPRTIGFSLSSQCF 1828


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 92  TTVYDTKKSCHLNSKLYRIGYEIQKAFYS 178
           TT+ + K+S  LNS+ Y + Y  ++  YS
Sbjct: 412 TTIVEVKESEVLNSQAYLLFYHERQILYS 440


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 332  RNQMEIMERILGTNSTELYNKRQALTRGHLAPR 430
            R  ME++ ++LG ++T+  N +Q L R    P+
Sbjct: 3232 RITMEVVCKLLGFSATDWKNVQQLLKRDDFIPK 3264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,071
Number of Sequences: 5004
Number of extensions: 43311
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)