Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30207
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 32 0.24
08_02_0766 - 20993207-20993307,20993510-20993612,20993686-209937... 30 0.97
01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480 30 0.97
07_03_1292 - 25558643-25559376,25559989-25560097,25560578-255606... 29 2.2
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 29 3.0
01_05_0057 + 17705023-17705143,17706186-17706538,17708002-177080... 29 3.0
01_01_0016 - 88825-90411 28 3.9
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 27 6.8
05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,322... 27 9.0
04_04_0563 + 26258320-26259099 27 9.0
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729... 27 9.0
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 32.3 bits (70), Expect = 0.24
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 305 VPISKLYLKRNQMEIMERILGTNSTELYNKRQALTRGHLAPRADFPLRAQMRATFQYINT 484
+ IS L L +++++ R+L T L N A T ++ + F L ++ F Y++
Sbjct: 348 ITISSLLLDQHEIDEWHRVLNTIGCGLANDPNAETMSNILSLSFFNLPHYLKTCFMYLSV 407
Query: 485 APQWRTI 505
P+ R I
Sbjct: 408 FPEDRKI 414
>08_02_0766 -
20993207-20993307,20993510-20993612,20993686-20993730,
20993848-20993916,20994463-20994510,20995357-20995404,
20995492-20995551,20996063-20996119,20996403-20996471,
20996511-20996603
Length = 230
Score = 30.3 bits (65), Expect = 0.97
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -2
Query: 355 LHNFHLIPFKIQFTNGHIIEYASVQELGTXVTL*RRKRR 239
L+ HL+ F + F NG I+E++++ + V L R +RR
Sbjct: 184 LYELHLL-FPLHFLNGRIVEWSAIPAVWYHVILVRTRRR 221
>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
Length = 623
Score = 30.3 bits (65), Expect = 0.97
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 11 KCVEKTSF-LLGGWRGEFRNVTCKTQPWTTVYDTKKSCHLNSKLYRI 148
KC K S ++G W+ E+ T KT W T T LNSKL +
Sbjct: 458 KCKIKGSHTIVGLWKHEYWQPTMKTSDWYTKSCTYSWVSLNSKLINL 504
>07_03_1292 -
25558643-25559376,25559989-25560097,25560578-25560676,
25560797-25560893,25560973-25561027,25561072-25561187,
25561445-25561562,25562369-25562684
Length = 547
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 45 AGGVSLETSRAKLSRGPRCTTRKRV 119
AGG + +TSRA+L R R T R R+
Sbjct: 360 AGGQNTKTSRARLDRSDRSTNRARM 384
>02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 28.7 bits (61), Expect = 3.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 502 CPPLRGRVYVLECGPHLR 449
CPPL+G Y+L C P ++
Sbjct: 1219 CPPLKGEDYILYCHPEIQ 1236
>01_05_0057 +
17705023-17705143,17706186-17706538,17708002-17708044,
17708698-17709140
Length = 319
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 110 SCRTPWSTAEFCT*RF*THPSSL 42
SCR P TA+FCT R+ P+S+
Sbjct: 26 SCRDPSPTAKFCTLRYEFKPASI 48
>01_01_0016 - 88825-90411
Length = 528
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 339 KWKLWRGSSERTALSCITNDRL*LVVTWPLAQTSLFERR 455
KW L RG +RT + D L V + T+LF RR
Sbjct: 188 KWNLLRGYPQRTIFDSLAADALDYRVYFKTIPTTLFYRR 226
>06_03_1313 - 29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 27.5 bits (58), Expect = 6.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 502 CPPLRGRVYVLECGPHLR 449
CPP++G Y+L C P ++
Sbjct: 1118 CPPVKGEDYILYCHPEIQ 1135
>05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,
32233-33714
Length = 1189
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 7/37 (18%)
Frame = -3
Query: 165 FCISYPILY-----SLLFKWQ--LFFVSYTVVHG*VL 76
FC+ YP+LY +LLF+W L +++Y V G ++
Sbjct: 968 FCLRYPMLYQEGPQNLLFRWSRLLGWMAYGVASGVII 1004
>04_04_0563 + 26258320-26259099
Length = 259
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 454 LRSKREVCARGQVTTSQSLSFVIQLSAVRSEDPLHNFHL 338
L +R VC G +T + V QL + SE+P HL
Sbjct: 57 LLKERIVCIHGPITDDTASLVVAQLLFLESENPAKPVHL 95
>02_05_0226 +
26971851-26972034,26972734-26972834,26972876-26972978,
26973335-26973477,26973525-26973605,26973929-26974015,
26974097-26974239,26974746-26974896,26974973-26975095,
26975362-26975445,26975531-26975718,26976726-26976900,
26977008-26977129,26977231-26977310,26977532-26977590,
26977921-26978075,26978680-26978858,26980050-26980162,
26980243-26980413,26980552-26980680,26980756-26980856,
26980942-26981059,26981739-26981818,26983230-26983302,
26983865-26983950,26984025-26984076,26984221-26984352,
26984560-26984628,26984912-26985004,26985806-26985901,
26986710-26986808,26986894-26986986,26987459-26987608,
26988391-26988549
Length = 1323
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = -2
Query: 505 DCPPLRGRVYVLECGPHLRSKREVCARGQVTTSQSLSFVIQLSAVRSEDPLHNFHLIPFK 326
+ P + R+ + + G R + RG T Q+ + +QL ED + L+PF+
Sbjct: 572 ELPLVSYRISINQVGKPTSKLRGIYLRGSNTCRQTSEWTVQLDPKFHEDASNMEQLVPFE 631
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,669,887
Number of Sequences: 37544
Number of extensions: 279861
Number of successful extensions: 628
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -