Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30207
         (518 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)                      29   2.3  
SB_46448| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_41403| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_22133| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_25881| Best HMM Match : SNARE (HMM E-Value=9.8)                     27   9.3  
SB_21717| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.64)             27   9.3  
SB_27361| Best HMM Match : DUF733 (HMM E-Value=6.7)                    27   9.3  

>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
          Length = 2074

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 78   LHVTFLNSPLQPPNRNDVFSTH 13
            L +TF    LQ  NRNDVF T+
Sbjct: 1321 LKITFAGETLQDTNRNDVFKTY 1342


>SB_46448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/77 (22%), Positives = 30/77 (38%)
 Frame = +2

Query: 122 HLNSKLYRIGYEIQKAFYSLYEACFDLSEMKTHYVTHVLTPFTTLQSYXRTQFLDGGVFD 301
           HL   +  +GY  +    + Y     +     HY   +  P  ++       FL GG   
Sbjct: 176 HLAEAIGYLGYTPEAGIVNYYPLSASMGGHTDHYELDLSWPLISVSFGQSAVFLIGGKTK 235

Query: 302 NVPISKLYLKRNQMEIM 352
           +V  + LY++   + IM
Sbjct: 236 DVKPTALYIRSGDILIM 252


>SB_41403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1415

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +2

Query: 293  VFDNVPISKLYLKRNQMEIMERILGTNSTELYNKRQALTRGHLAPRADF 439
            V D + ++   LKR  +E M + +G N+T   N+R   + G L  RADF
Sbjct: 894  VIDRMHLTFNMLKREFLEKMWKDMGDNATLPVNERDPQS-GGLLNRADF 941


>SB_22133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 99 TVVHG*VLHVTFLNSPLQPPNRNDVFSTH 13
          TVV+  V+ +TF    LQ  NR DVF T+
Sbjct: 6  TVVNN-VVKITFAGETLQDTNRYDVFKTY 33


>SB_25881| Best HMM Match : SNARE (HMM E-Value=9.8)
          Length = 251

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
 Frame = +2

Query: 68  VTCKTQPWTTVYDTK-KSCHLNSKLYRIGYEIQKAFYSLYEACFDLSEMKTHY----VTH 232
           VT K +  T   DT+ KS ++  K+ R+ YE  +A  +L + C   +   T       T 
Sbjct: 81  VTTKIRRDTIKPDTRRKSQYILPKIRRLKYE--EASPNLKKQCTKTNNKNTSAFFKPATK 138

Query: 233 VLTPFTTLQSYXRTQFLDGGVFDNVPISKLYLKRNQMEIMERI 361
             T   TLQ +  TQ L G        S  YL++  +E + R+
Sbjct: 139 QNTRLDTLQLWASTQNLKGKSNSRKTPSDPYLRKRTVEEIRRL 181


>SB_21717| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.64)
          Length = 499

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -2

Query: 493 LRGRVYVLECGPHLRSKREVCARGQVTTSQSLSFVIQLSAVRSEDPLHNFHLIPFKIQ 320
           +RGRV V+ CG     K      G   + +  +  IQ SA  S++PLH+     +K+Q
Sbjct: 174 IRGRVVVIPCGYRFTLK----PPGMANSLRHRTLKIQASA--SKNPLHSPRNSTYKVQ 225


>SB_27361| Best HMM Match : DUF733 (HMM E-Value=6.7)
          Length = 267

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 78  LHVTFLNSPLQPPNRNDVFSTH 13
           L +TF    LQ  NR+DVF T+
Sbjct: 87  LKITFAGETLQDTNRHDVFKTY 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,030,424
Number of Sequences: 59808
Number of extensions: 328275
Number of successful extensions: 997
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)