Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30207
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden...    29   2.5  
At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related prot...    29   2.5  
At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc f...    29   2.5  
At3g61820.1 68416.m06939 aspartyl protease family protein contai...    28   4.3  
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi...    28   4.3  
At5g56360.1 68418.m07034 calmodulin-binding protein similar to a...    27   5.7  
At1g26460.1 68414.m03227 pentatricopeptide (PPR) repeat-containi...    27   5.7  
At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putativ...    27   7.6  

>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) identical
            to HAC5 (GI:21105780) [Arabidopsis thaliana]; similar to
            CREB-binding protein GB:S39162 from [Homo sapiens]
          Length = 1670

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 502  CPPLRGRVYVLECGPHLR 449
            CPPL+G  Y+L C P ++
Sbjct: 1231 CPPLKGEDYILYCHPEIQ 1248


>At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related protein 2
            (PCAT2) contains Pfam domains PF02135: TAZ zinc finger
            and PF00569: Zinc finger, ZZ type; identical to cDNA
            p300/CBP acetyltransferase-related protein 2  GI:12597460
          Length = 1691

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 502  CPPLRGRVYVLECGPHLR 449
            CPPL+G  Y+L C P ++
Sbjct: 1245 CPPLKGEDYILYCHPEIQ 1262


>At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc finger
            (ZZ type) family protein contains Pfam profiles PF02135:
            TAZ zinc finger, PF00569: Zinc finger, ZZ type
          Length = 1706

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 502  CPPLRGRVYVLECGPHLR 449
            CPPL+G  Y+L C P ++
Sbjct: 1260 CPPLKGEDYILYCHPEIQ 1277


>At3g61820.1 68416.m06939 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 483

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 173 YSLYEACFDLSEMKTHYVTHVLTPF 247
           YSL++ CFDLS M T  V  V+  F
Sbjct: 397 YSLFDTCFDLSGMTTVKVPTVVFHF 421


>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
            to CREB-binding protein GB:AAC51770 GI:2443859 from [Homo
            sapiens]; contains Pfam PF02135: TAZ zinc finger profile;
            contains Pfam PF00569: Zinc finger, ZZ type domain;
            identical to histone acetyltransferase HAC4 (GI:14794966)
            {Arabidopsis thaliana}
          Length = 1456

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 502  CPPLRGRVYVLECGPHLR 449
            CPPL+G  Y+L C P ++
Sbjct: 1012 CPPLKGDDYILYCHPEIQ 1029


>At5g56360.1 68418.m07034 calmodulin-binding protein similar to
           alpha glucosidase II beta subunit from GI:2104691 [Mus
           musculus]
          Length = 647

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +2

Query: 161 QKAFYSLYEACFDLSEMKTHYVTHVLTPFTTLQSYXRTQFLDGGVFDN 304
           +K FYS +  CF+  + K  Y        T  + Y +T+  +   F+N
Sbjct: 519 EKEFYSFHGRCFESKQGKYTYKVCAYKEATQEEGYSKTRLGEWDKFEN 566


>At1g26460.1 68414.m03227 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 630

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 158 IQKAFYSLYEACFDLSEMKTHYVTHVLTPFTTL 256
           +QKAF SL+E     ++ +   V  +L+PFT+L
Sbjct: 402 LQKAFTSLHELESAYADSEKEVVEEMLSPFTSL 434


>At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putative
            similar to UV-damaged DNA binding protein (GI:12082087)
            [Oryza sativa]; contains Pfam PF03178 : CPSF A subunit
            region
          Length = 1088

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 278  FLDGGVFDNVPISKLYLKRNQMEIMERILGTNSTELYNKRQALTRGH 418
            FLDG + +    S L L RN+ME + + +     EL  + + LTR H
Sbjct: 1046 FLDGDLIE----SFLDLSRNKMEDISKSMNVQVEELCKRVEELTRLH 1088


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,647,993
Number of Sequences: 28952
Number of extensions: 225235
Number of successful extensions: 519
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)