Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30206
         (641 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6BNT9 Cluster: Similar to CA2484|IPF9846 Candida albic...    35   1.5  
UniRef50_Q3EQF5 Cluster: Sensor protein; n=1; Bacillus thuringie...    34   2.5  
UniRef50_Q9QME4 Cluster: Gag polyprotein; n=78; root|Rep: Gag po...    33   7.7  
UniRef50_Q98RW4 Cluster: Putative uncharacterized protein orf556...    33   7.7  

>UniRef50_Q6BNT9 Cluster: Similar to CA2484|IPF9846 Candida albicans
           IPF9846 unknown function; n=1; Debaryomyces
           hansenii|Rep: Similar to CA2484|IPF9846 Candida albicans
           IPF9846 unknown function - Debaryomyces hansenii (Yeast)
           (Torulaspora hansenii)
          Length = 827

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 14/44 (31%), Positives = 28/44 (63%)
 Frame = -1

Query: 413 LINKNNYKKKFSKINSYHMITVVFRMVFLGKCLPS*ITCLIRCF 282
           L+ + +Y  +FS++NS HMI  + R++ + K +    TC++ C+
Sbjct: 394 LLYRKSYNLEFSQVNS-HMINYLMRLMLITKNVDLITTCIVECY 436


>UniRef50_Q3EQF5 Cluster: Sensor protein; n=1; Bacillus
           thuringiensis serovar israelensis ATCC 35646|Rep: Sensor
           protein - Bacillus thuringiensis serovar israelensis
           ATCC 35646
          Length = 472

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +3

Query: 318 TFSQKNHTEYYCNHMVRIYFGKLFFVIVFIDQNVFITFLMLNYKVTRVVIEL 473
           TFS KN  E Y     +I+F  +F   VF   NV+I    +  K+TR + +L
Sbjct: 148 TFSDKN--EEYVYVFYKIFFSTIFLFFVFFSMNVYIFSRQIARKITRPLDKL 197


>UniRef50_Q9QME4 Cluster: Gag polyprotein; n=78; root|Rep: Gag
            polyprotein - Avian endogenous retrovirus EAV-HP
          Length = 1125

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -1

Query: 353  TVVFRMVFLGKCLPS*ITCLIRCFGDCLLIIM 258
            T++F ++ +  CL + I CLI+CF DCLL  M
Sbjct: 1078 TLLFALLVIA-CLLAIIPCLIKCFQDCLLRTM 1108


>UniRef50_Q98RW4 Cluster: Putative uncharacterized protein orf556;
           n=1; Guillardia theta|Rep: Putative uncharacterized
           protein orf556 - Guillardia theta (Cryptomonas phi)
          Length = 556

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 425 YKDILINKNNYKKKFSKINSYHMITVVFRMVFLGK 321
           YKDI +NKN  KKK    N Y++  + F++  + K
Sbjct: 287 YKDIFLNKNIKKKKTKSKNFYYIWKITFKISCISK 321


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 547,725,783
Number of Sequences: 1657284
Number of extensions: 10051733
Number of successful extensions: 21381
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21372
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)