Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30206
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    26   5.3  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.3  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    25   7.0  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    25   9.3  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -3

Query: 351 SSIPYGFSGKMSAILNHVFNSMLRG--LPAN--NHVTNHSRDQRLIICANVQSYTFAIKE 184
           SS PYG    +     H   + + G   P N  N++T   R+ RLII  + ++   AIKE
Sbjct: 81  SSRPYGHRAVLK-FAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKE 139

Query: 183 KATKN 169
            +  N
Sbjct: 140 ASFVN 144


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 178 NEK*PLKSESPRSAHIQFKKKTLNL-TRLNYCND 80
           N+  PL++E+  SAH  +   TLNL + LN   D
Sbjct: 261 NDLQPLQAEAFHSAHNGYSSSTLNLNSELNVMKD 294


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 372 YFGKLFFVIVFIDQNVF-ITFLMLNYKV 452
           Y GK +F+ VF  Q +F + F MLN+ +
Sbjct: 92  YHGKWYFIRVFGIQELFSVFFSMLNFMI 119


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 562 NVTMCYNQL*YVQMRSFNSTLHYTYYPH 479
           N  +C+  + Y+Q   F+S  H+  Y H
Sbjct: 40  NNQVCFEAIKYIQRHYFSSQSHHVTYLH 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,087
Number of Sequences: 5004
Number of extensions: 45823
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)