Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30206
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9691| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-08)                  29   2.4  
SB_22182| Best HMM Match : DUF1626 (HMM E-Value=1.7)                   28   7.4  
SB_53777| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   9.8  
SB_53513| Best HMM Match : Flavi_NS2B (HMM E-Value=5.1)                27   9.8  
SB_33819| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_27413| Best HMM Match : 7tm_1 (HMM E-Value=6.5e-08)                 27   9.8  
SB_15051| Best HMM Match : 7tm_1 (HMM E-Value=4e-06)                   27   9.8  
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_9691| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-08)
          Length = 419

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 341 GILL*SYGKNLFWKTFFCNCFY*SKCL 421
           G L+    KN+FWKTF   CF  + CL
Sbjct: 347 GKLMTDVEKNIFWKTFSYICFAVNACL 373


>SB_22182| Best HMM Match : DUF1626 (HMM E-Value=1.7)
          Length = 357

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -3

Query: 336 GFSGKMSAILNHVFNSMLRGLPANNHVTNHSRDQRLIICANVQSYTFAIKEKATKNDR*K 157
           GF G  S + + V +       A   V N +R   + +CA V S   A K + +K    +
Sbjct: 56  GFDGPRSELYDSVDDDRELAAKAVAIVVNSTRKGVVSLCAEVASLLKAKKRQESKETSLQ 115

Query: 156 AS--HLDRHTY 130
            S  HL++ TY
Sbjct: 116 MSVKHLNKETY 126


>SB_53777| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 364

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 114 VFFLNCMCADLGDSLFSGHFSLPSLLWQRYMIG 212
           +F +N  C DLG +L S  FSL + + + +++G
Sbjct: 60  LFIINMACGDLGVALLSMPFSLIASISRDWVLG 92


>SB_53513| Best HMM Match : Flavi_NS2B (HMM E-Value=5.1)
          Length = 166

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 341 GILL*SYGKNLFWKTFFCNCFY*SKCL 421
           G L+    K++FWKTF   CF  + CL
Sbjct: 94  GELMTDVEKDIFWKTFSYICFAVNACL 120


>SB_33819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 341 GILL*SYGKNLFWKTFFCNCFY*SKCL 421
           G L+    K++FWKTF   CF  + CL
Sbjct: 546 GKLMTDVEKDIFWKTFSYICFAVNACL 572


>SB_27413| Best HMM Match : 7tm_1 (HMM E-Value=6.5e-08)
          Length = 646

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 341 GILL*SYGKNLFWKTFFCNCFY*SKCL 421
           G L+    K++FWKTF   CF  + CL
Sbjct: 589 GELMTDVEKDIFWKTFSYICFAVNACL 615


>SB_15051| Best HMM Match : 7tm_1 (HMM E-Value=4e-06)
          Length = 403

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 341 GILL*SYGKNLFWKTFFCNCFY*SKCL 421
           G L+    K++FWKTF   CF  + CL
Sbjct: 331 GELMTDVEKDIFWKTFSYICFAVNACL 357


>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2060

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 402  KQLQKKVFQNKFLPYDYSSIPYGFSGKMSAILNHVFNSML 283
            + L   +  NK LP   + I Y  +G+M+  L H +N+ML
Sbjct: 953  RPLSLGIILNKSLPKLPAFIIYDRAGEMTVSLKHCYNTML 992


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,487,420
Number of Sequences: 59808
Number of extensions: 330906
Number of successful extensions: 612
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)