Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30206
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    25   0.82 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.5  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   4.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   4.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   5.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   7.7  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 428 SYKDILINKNNYKKKFSKINSYHMITV 348
           +Y +   N NNYKK +  IN    I +
Sbjct: 312 NYSNNYYNNNNYKKLYYNINYIEQIPI 338


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -3

Query: 300 VFNSMLR-GLPANNHVTNHSRDQRLIICANVQSYT--FAIKE 184
           V+N + R   PA  ++T ++  Q   I AN+ SYT   A+KE
Sbjct: 40  VYNLLYRVAQPALANITWYNEGQAWNIEANIDSYTNAAAVKE 81


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -3

Query: 300 VFNSMLR-GLPANNHVTNHSRDQRLIICANVQSYT--FAIKE 184
           V+N + R   PA  ++T ++  Q   I AN+ SYT   A+KE
Sbjct: 40  VYNLLYRVAQPALANITWYNEGQAWNIEANIDSYTNAAAVKE 81


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 5/19 (26%), Positives = 13/19 (68%)
 Frame = +3

Query: 321 FSQKNHTEYYCNHMVRIYF 377
           ++  N+ + YCN+  ++Y+
Sbjct: 91  YNNNNYKKLYCNNYKKLYY 109


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 5/19 (26%), Positives = 13/19 (68%)
 Frame = +3

Query: 321 FSQKNHTEYYCNHMVRIYF 377
           ++  N+ + YCN+  ++Y+
Sbjct: 91  YNNNNYKKLYCNNYKKLYY 109


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 5/19 (26%), Positives = 13/19 (68%)
 Frame = +3

Query: 321 FSQKNHTEYYCNHMVRIYF 377
           ++  N+ + YCN+  ++Y+
Sbjct: 91  YNNNNYKKLYCNNYRKLYY 109


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 586 EFYLLLDYNVTMCYNQL 536
           +F+ L+D N   C+N L
Sbjct: 328 QFFNLIDQNAVGCWNSL 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,279
Number of Sequences: 438
Number of extensions: 3275
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)